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Platform GPL21469 Query DataSets for GPL21469
Status Public on Feb 17, 2016
Title [GuiGene-1_0-st] Affymetrix Guinea Pig Gene 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Cavia porcellus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%chip_type=GuiGene-1_0-st-v1
#%lib_set_name=GuiGene-1_0-st
#%lib_set_version=v1
#%genome-species=Cavia porcellus
#%genome-version=cavpor3
#%genome-version-ucsc=cavpor3
#%genome-version-create_date=2012-03-01
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Cavia porcellus
#%genome-lifted_from-version-ucsc=cavpor3
#%netaffx-annotation-date=2014-10-31
#%netaffx-annotation-netaffx-build=35
#%netaffx-annotation-data-type=probe_set

 
Submission date Feb 17, 2016
Last update date Feb 17, 2016
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 

Data table header descriptions
ID probe set id
seqname
strand
start
stop
probe_count
transcript_cluster_id
exon_id
psr_id
gene_assignment
mrna_assignment
crosshyb_type
number_cross_hyb_probes
number_nonoverlapping_probes
ensGene
probeset_type
SPOT_ID

Data table
ID seqname strand start stop probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment crosshyb_type number_cross_hyb_probes number_nonoverlapping_probes ensGene probeset_type SPOT_ID
19966077 chrM + 6 65 24 19966076 16003997 4558383 --- ENSCPOT00000017553 // --- // 100 // 24 // 24 // 0 1 0 0 1 main chrM(+):6-65
19966079 chrM + 78 993 24 19966078 16003999 4558386 ENSCPOT00000017554 // LOC101787939 ENSCPOT00000017554 // --- // 100 // 24 // 24 // 0 1 0 14 1 main chrM(+):78-993
19966081 chrM + 1014 1077 22 19966080 16004001 4558389 --- ENSCPOT00000017555 // --- // 100 // 22 // 22 // 0 1 0 0 1 main chrM(+):1014-1077
19966083 chrM + 1169 2589 25 19966082 16004003 4558392 --- ENSCPOT00000017556 // --- // 100 // 25 // 25 // 0 /// GENSCAN00000002571 // --- // 80 // 4 // 5 // 0 1 0 19 1 main chrM(+):1169-2589
19966085 chrM + 2644 2697 15 19966084 16004005 4558395 --- ENSCPOT00000017557 // --- // 100 // 15 // 15 // 0 1 0 0 1 main chrM(+):2644-2697
19966087 chrM + 2750 3637 25 19966086 16004007 4558398 ENSCPOT00000017558 // ND1 ENSCPOT00000017558 // --- // 100 // 25 // 25 // 0 1 0 15 2 main chrM(+):2750-3637
19966089 chrM + 3818 3854 13 19966088 16004009 4558401 --- ENSCPOT00000017561 // --- // 100 // 13 // 13 // 0 1 0 0 1 main chrM(+):3818-3854
19966091 chrM + 3916 4937 21 19966090 16004011 4558404 ENSCPOT00000017562 // ND2 ENSCPOT00000017562 // --- // 95 // 20 // 21 // 0 1 0 16 2 main chrM(+):3916-4937
19966093 chrM + 5384 6859 24 19966092 16004013 4558407 ENSCPOT00000017568 // COX1 ENSCPOT00000017568 // --- // 100 // 24 // 24 // 0 1 0 24 1 main chrM(+):5384-6859
19966097 chrM + 7020 7692 24 19966096 16004017 4558413 ENSCPOT00000017571 // COX2 ENSCPOT00000017571 // --- // 100 // 24 // 24 // 0 1 0 13 1 main chrM(+):7020-7692
19966099 chrM + 7702 7736 10 19966098 16004019 4558416 --- ENSCPOT00000017572 // --- // 100 // 10 // 10 // 0 1 0 0 1 main chrM(+):7702-7736
19966101 chrM + 8122 9366 23 19966100 16004021 4558419 ENSCPOT00000017574 // ATP6 /// ENSCPOT00000017575 // COX3 ENSCPOT00000017574 // --- // 100 // 8 // 8 // 0 /// ENSCPOT00000017575 // --- // 100 // 15 // 15 // 0 1 0 18 3 main chrM(+):8122-9366
19966103 chrM + 9403 9462 24 19966102 16004023 4558422 --- ENSCPOT00000017576 // --- // 100 // 24 // 24 // 0 1 0 0 1 main chrM(+):9403-9462
19966105 chrM + 9470 9797 25 19966104 16004025 4558425 ENSCPOT00000017577 // ND3 ENSCPOT00000017577 // --- // 100 // 25 // 25 // 0 1 0 2 1 main chrM(+):9470-9797
19966107 chrM + 9832 9877 20 19966106 16004027 4558428 --- ENSCPOT00000017578 // --- // 100 // 20 // 20 // 0 1 0 0 1 main chrM(+):9832-9877
19966109 chrM + 9914 11372 25 19966108 16004029 4558431 ENSCPOT00000017579 // ND4L /// ENSCPOT00000017580 // ND4 ENSCPOT00000017579 // --- // 100 // 5 // 5 // 0 /// ENSCPOT00000017580 // --- // 100 // 20 // 20 // 0 1 0 23 2 main chrM(+):9914-11372
19966113 chrM + 11621 11660 14 19966112 16004033 4558437 --- ENSCPOT00000017582 // --- // 100 // 14 // 14 // 0 1 0 0 1 main chrM(+):11621-11660
19966115 chrM + 11678 11747 19 19966114 16004035 4558440 --- ENSCPOT00000017583 // --- // 100 // 19 // 19 // 0 1 0 0 1 main chrM(+):11678-11747
19966117 chrM + 11921 13481 23 19966116 16004037 4558443 ENSCPOT00000017584 // ND5 ENSCPOT00000017584 // --- // 100 // 23 // 23 // 0 /// GENSCAN00000040154 // --- // 89 // 8 // 9 // 0 /// GENSCAN00000049375 // --- // 100 // 4 // 4 // 0 /// GENSCAN00000000589 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000000891 // --- // 50 // 1 // 2 // 0 /// GENSCAN00000016352 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000016645 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000018837 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000021066 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000022563 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000023053 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000025363 // --- // 50 // 1 // 2 // 0 /// GENSCAN00000028130 // --- // 60 // 3 // 5 // 0 /// GENSCAN00000030922 // --- // 50 // 1 // 2 // 0 /// GENSCAN00000046466 // --- // 60 // 3 // 5 // 0 1 0 21 1 main chrM(+):11921-13481
19966119 chrM + 14229 15287 25 19966118 16004039 4558446 ENSCPOT00000017587 // CYTB ENSCPOT00000017587 // --- // 100 // 25 // 25 // 0 1 0 23 1 main chrM(+):14229-15287

Total number of rows: 174742

Table truncated, full table size 56748 Kbytes.




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