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Platform GPL21664 Query DataSets for GPL21664
Status Public on Mar 30, 2016
Title Agilent-020624 Yersinia pestis 8x15K array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Yersinia pestis
Manufacturer Agilent
Manufacture protocol see Agilent website
 
 
Submission date Mar 29, 2016
Last update date Mar 30, 2016
Contact name Ida Steinberger-Levy
E-mail(s) idas@iibr.gov.il
Organization name IIBR
Street address P.O. box 19
City Ness-Ziona
ZIP/Postal code 74100
Country Israel
 
Samples (12) GSM2101145, GSM2101146, GSM2101147, GSM2101148, GSM2101149, GSM2101150 
Series (2)
GSE79687 Y. pestis exposed to various concentrations of ciprofloxacin for various time points (treated/nontreated analysis in each array).
GSE101490 The Yersinia pestis NlpD Lipoprotein is important for iron assimilation and is functionally linked to the twin-arginine translocation system

Data table header descriptions
ID Agilent feature extraction number
ProbeName
accessions
Sequence
GeneName
Description
ORF Yersinia pestis gene id
Synonym Yersinia pestis gene id
PID Entrez Protein gi number
SPOT_ID controls
GB_RANGE

Data table
ID ProbeName accessions Sequence GeneName Description ORF Synonym PID SPOT_ID GB_RANGE
1 GE_BrightCorner GE_BrightCorner --GE_BrightCorner
2 DarkCorner DarkCorner --DarkCorner
3 DarkCorner DarkCorner --DarkCorner
4 YP_CR_3214 emb|AL590842:c3983940-3983677 CACTTTCAGGTGATTGTAGTGGGTGAGTTATTTGCCGACATGAACCGAGTGAAGAAACAG YPO3570 BolA-like protein YPO3570 YPO3570 16123714 NC_003143.1[c3983940..3983677]
5 YP_CR_4394 emb|AL590842:c130716-130333 CGCTCTTGCGTATTCAATCGTCATTAAGGGTCATCAGCAGTATGGAACAATTTGAAGCAA YPO0122 conserved hypothetical protein YPO0122 YPO0122 16120467 NC_003143.1[c130716..130333]
6 YP_CR_489 emb|AL590842:4597877-4598857 AAGAGAGCATTGGTGATGACTGGTTCGGTGTTGACGTTCACCATAAAACCATTGGTATTC YPO4078 putative D-isomer specific 2-hydroxyacid dehydrogenase YPO4078 YPO4078 16124190 NC_003143.1[4597877..4598857]
7 YP_CR_2101 emb|AL590842:c1249638-1247959 ATCCAAATCGTCTATATGAGCTAGAAAAACGGTTATCTCGGCAATTAAATCTCGCGCGGA YPO1105 DNA repair protein RecN YPO1105 YPO1105 16121405 NC_003143.1[c1249638..1247959]
8 YP_CR_10796 emb|AL590842:70187-71398 TTATCTATTTTCAAACTCACTGGCTCCAGCGATTGTCGCCGCGTCTATTGAAGTCTTGTC kbl 2-amino-3-ketobutyrate coenzyme A ligase kbl YPO0059 16120412 NC_003143.1[70187..71398]
9 YP_CR_9859 emb|AL590842:c3161497-3159785 TCTGGGGTTCTTTGTTTATCTGATTGGTGGTTCGCTAGATAAGCTCTTTTATGCCGAGTC pstA putative phosphate transport system permease pstA YPO2834 16123029 NC_003143.1[c3161497..3159785]
10 YP_CR_4585 emb|AL590842:3855341-3856908 CGTCAAGGTCGTTGAAATCCCATCAGCAGAACAAAACTATTTGGTGTTTAACACCGCTAA YPO3448 pseudo [Yersinia pestis CO92] YPO3448 YPO3448 NC_003143.1[3855341..3856908]
11 YP_CR_8482 emb|AL590842:1928171-1928404 GTTGCTGGTGCATCCAAGGTTCGGGTCAGGGGATTGATCCAAGAATTATGGAATCACTGA YPO1690 hypothetical protein YPO1690 YPO1690 16121950 NC_003143.1[1928171..1928404]
12 YP_CR_8154 emb|AL590842:c1703505-1701145 GTGATGAGGTGCAACGATATGGGGCACTGAAATTACATCATCAGAGTGATCTTAGTACCG YPO1499 putative membrane protein YPO1499 YPO1499 16121772 NC_003143.1[c1703505..1701145]
13 YP_CR_1948 emb|AL590842:1649388-1650134 ATAGTGGTGCAGTAGAGTACGTGGGAGACCGTCTTCTCGTCGATTTTAGTAACATTGATG YPO1456 putative beta-ketoacyl-[acyl-carrier-protein] reductase YPO1456 YPO1456 16121731 NC_003143.1[1649388..1650134]
14 YP_CR_10966 emb|AL590842:728935-729846 TTCTGGCTGATCAAATTCTAGAGACTTGGCAACCGATCAACGCCGTTTATTACCGTAATA crgA LysR-family regulatory protein crgA YPO0669 16120994 NC_003143.1[728935..729846]
15 YP_CR_2028 emb|AL590842:3810251-3811045 ATATTTTAAATATTGCTCGTCAGGATTACGATCCACAAGGTGCCAGCGTCACCATTTTGG speD S-adenosylmethionine decarboxylase proenzyme speD YPO3412 16123561 NC_003143.1[3810251..3811045]
16 YP_CR_8036 emb|AL590842:1787099-1788301 GTCCTGATCGTAAACTGATGATTGACGCCAATCAGATCTGGGAAACTAACGAGGCTATTC YPO1567 putative racemase YPO1567 YPO1567 16121837 NC_003143.1[1787099..1788301]
17 YP_CR_1047 emb|AL590842:688077-688457 ACCGATCAATCCTGATACAGGGGATCTTGTTGAAAATGACATTGAAAAACAAACTCGTCA YPO0627 putative translational inhibitor protein YPO0627 YPO0627 16120953 NC_003143.1[688077..688457]
18 YP_CR_8895 emb|AL590842:2127967-2128764 TACAGAAAGAGCTTACTCACGCTTCTCCCTCGGAAATTATTGCACTGAATCTGTCTCCAG YPO1890 GntR-family putative transcriptional regulatory protein YPO1890 YPO1890 16122137 NC_003143.1[2127967..2128764]
19 YP_CR_10122 emb|AL590842:2433966-2435012 TGATTTACAAAAACAATTACTTTGTGATCCTCAAACCTCTGGCGGATTACTGTTGGCGGT fdhB selenide, water dikinase fdhB YPO2164 16122396 NC_003143.1[2433966..2435012]
20 YP_CR_7764 emb|AL590842:c1768395-1767400 GTAAACCTAATGCGTTCGGCACCTTAATTGGCGCGATAATTTTGGGTGTCTTGCAAAATG YPO1553 ribose transport system, permease protein YPO1553 YPO1553 16121826 NC_003143.1[c1768395..1767400]

Total number of rows: 15744

Table truncated, full table size 2988 Kbytes.




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Supplementary file Size Download File type/resource
GPL21664_Platform_table.txt.gz 688.0 Kb (ftp)(http) TXT

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