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Platform GPL21775 Query DataSets for GPL21775
Status Public on Apr 27, 2016
Title Agilent-077089 C.griseus_Refseq2015 [Feature number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Cricetulus griseus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Transcript sequence from Refseq Protein coding genes 2015July

Arrays of this design have barcodes that begin with 16077089 or 2577089.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 26, 2016
Last update date Apr 27, 2016
Contact name yoshiyuki ishii
E-mail(s) yoshiyuki_ishii@agilent.com
Organization name Agilent
Street address takakura-cho
City hachiouji
ZIP/Postal code 192-8510
Country Japan
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 CUST_15147_PI430434431 CUST_15147_PI430434431 FALSE XM_007624122.1 XM_007624122.1 ref|XM_007624122.1|gi|625261772 unmapped AATCACAGATGTTACCCATTATTGTGGCACAACTTGGAGCTCAGGGTACTCTCCTAAGCT
5 192 320 CUST_47973_PI430434431 CUST_47973_PI430434431 FALSE XM_003499930.2 XM_003499930.2 ref|XM_003499930.2|gi|625192498 unmapped GGATGTGTTTGATTTTCCCCACTAACTCTGTTATTGAATCCTTATATATAATGTAGGCAG
6 192 318 CUST_2627_PI430434431 CUST_2627_PI430434431 FALSE XM_007637607.1 XM_007637607.1 ref|XM_007637607.1|gi|625288130 unmapped CATTGAAAGTCACCCCAACTGTTTATATTTGGATTCTATGCACTGTGATCCTAAGGCAAA
7 192 316 NA NA ignore
8 192 314 CUST_42518_PI430434431 CUST_42518_PI430434431 FALSE XM_007645383.1 XM_007645383.1 ref|XM_007645383.1|gi|625204264 unmapped CAGAGAAATTGCTTCTCTTTAGTAGTTTTGTAGTTTGTGCTGGTTCATTTCTATCGTCAT
9 192 312 CUST_13269_PI430434431 CUST_13269_PI430434431 FALSE XM_007626130.1 XM_007626130.1 ref|XM_007626130.1|gi|625265711 unmapped TAAATTAACCAGGCTTGAGGAAACTGGAGGTCACAAGAAAAAGAAGACAGGACCTTGGGG
10 192 310 CUST_30286_PI430434431 CUST_30286_PI430434431 FALSE XM_003515940.2 XM_003515940.2 ref|XM_003515940.2|gi|625229899 unmapped GGTGTGTCAGGAAGCATTCTTTTTGGAGTTGTGTTACAGTTTTAGATTTTATTTTCAGGG
11 192 308 NA NA ignore
12 192 306 CUST_21424_PI430434431 CUST_21424_PI430434431 FALSE XM_007617411.1 XM_007617411.1 ref|XM_007617411.1|gi|625248622 unmapped CTAGGTCAGGCCCATGACTGGCGTGAAGAACGAGAAGAAATAAACCAACATAGTTTCTGA
13 192 304 CUST_47360_PI430434431 CUST_47360_PI430434431 FALSE XM_007641236.1 XM_007641236.1 ref|XM_007641236.1|gi|625193839 unmapped TCCAGTTGTTCACCTGTCATCTCCTGAATAGCCTATTTACTTGACTTTGCAAGTCTCTAA
14 192 302 NA NA ignore
15 192 300 CUST_6589_PI430434431 CUST_6589_PI430434431 FALSE XM_007633337.1 XM_007633337.1 ref|XM_007633337.1|gi|625279769 unmapped TACCTTGAGTTTTCTGAAAAAGCTGACCTTTAGTACAATAAACGGTGCTAAGTGAAGGAA
16 192 298 CUST_44926_PI430434431 CUST_44926_PI430434431 FALSE XM_007643287.1 XM_007643287.1 ref|XM_007643287.1|gi|625198947 unmapped ATTTTTATTTTGAGACAGGGTCTAGGCTAACCTTAAGTTCGTGAGCTTCCTGCTTCAGCA
17 192 296 NA NA ignore
18 192 294 CUST_12212_PI430434431 CUST_12212_PI430434431 FALSE XM_007627269.1 XM_007627269.1 ref|XM_007627269.1|gi|625267903 unmapped AATGTAACCCTTGTGCAATCCACCCTTGGTTGAGGGTCATAAATTGAGGTGCCTTCCTTA
19 192 292 CUST_24572_PI430434431 CUST_24572_PI430434431 FALSE XM_007614053.1 XM_007614053.1 ref|XM_007614053.1|gi|625242025 unmapped GAGATGGGGTGGGCGTTGCAGACTTTATATATGTAATTACTGTTGTTATACTATTGTTAT
20 192 290 CUST_48128_PI430434431 CUST_48128_PI430434431 FALSE XM_003499742.2 XM_003499742.2 ref|XM_003499742.2|gi|625192068 unmapped AAGTCAGTTTGCCCCAGTTTCTCCAAGGGAGAATAGAGAGATTAGAGTACTTGGAAGCAC

Total number of rows: 62976

Table truncated, full table size 11041 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL21775_077089_D_GEO_20150726.txt.gz 2.8 Mb (ftp)(http) TXT

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