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Platform GPL21810 Query DataSets for GPL21810
Status Public on May 04, 2016
Title Agilent-074809 SurePrint G3 Mouse GE v2 8x60K Microarray [Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Catalog gene expression microarray for Mouse, v2 8x60K

Arrays of this design have barcodes that begin with 16074809 or 2574809.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL21163.
 
Submission date May 04, 2016
Last update date Jul 26, 2016
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (1739) GSM2150279, GSM2150280, GSM2150281, GSM2150282, GSM2150283, GSM2150284 
Series (137)
GSE81318 Gut microbiota transplantation in conventional mice
GSE83309 A systems approach reveals MAVS signaling in myeloid cells as critical in resistance to Ebola virus in murine models of infection
GSE83596 Hepatic transcriptomic changes during non-alcoholic steatohepatitis (NASH)-associated liver carcinogenesis in mice

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 192 328 GE_BrightCorner CONTROL pos
2 192 326 DarkCorner CONTROL pos
3 192 324 DarkCorner CONTROL pos
4 192 322 A_51_P399985 FALSE NM_015742 NM_015742 17925 Myo9b myosin IXb Mm.33779 ENSMUST00000170242 ref|NM_015742|ref|NM_001142322|ref|NM_001142323|ens|ENSMUST00000170242 chr8:73884459-73884518 mm|8qB3.3 Mus musculus myosin IXb (Myo9b), transcript variant 3, mRNA [NM_015742] GO:0000146(microfilament motor activity)|GO:0000166(nucleotide binding)|GO:0001726(ruffle)|GO:0002548(monocyte chemotaxis)|GO:0003774(motor activity)|GO:0003779(actin binding)|GO:0005096(GTPase activator activity)|GO:0005516(calmodulin binding)|GO:0005524(ATP binding)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005856(cytoskeleton)|GO:0005884(actin filament)|GO:0005938(cell cortex)|GO:0007165(signal transduction)|GO:0007266(Rho protein signal transduction)|GO:0008152(metabolic process)|GO:0008270(zinc ion binding)|GO:0016020(membrane)|GO:0016459(myosin complex)|GO:0016887(ATPase activity)|GO:0030010(establishment of cell polarity)|GO:0030027(lamellipodium)|GO:0030898(actin-dependent ATPase activity)|GO:0031941(filamentous actin)|GO:0032433(filopodium tip)|GO:0033275(actin-myosin filament sliding)|GO:0035556(intracellular signal transduction)|GO:0043008(ATP-dependent protein binding)|GO:0043531(ADP binding)|GO:0043547(positive regulation of GTPase activity)|GO:0046872(metal ion binding)|GO:0048246(macrophage chemotaxis)|GO:0048471(perinuclear region of cytoplasm)|GO:0051015(actin filament binding)|GO:0072673(lamellipodium morphogenesis) ACGGAGCCAGGGACTTGGAACCTTTAGGAACAATCAGTGCATCCGGTGACAGCCTGGGTT
5 192 320 A_55_P2508138 FALSE NR_028378 NR_028378 100034739 Gm17762 predicted gene, 17762 Mm.401643 ref|NR_028378|gb|AK171729|gb|AK045818|gb|AK033161 chr2:17952143-17952202 mm|2qA3 Mus musculus predicted gene, 17762 (Gm17762), long non-coding RNA [NR_028378] GGAAAGTACTTCAGCTTCACTCTTTAATTCTCCTTTACTACAATTAAAACTTTCGGTCAG
6 192 318 A_55_P2805880 FALSE NM_025684 NM_025684 66650 Nepn nephrocan Mm.90950 ENSMUST00000067085 ref|NM_025684|ens|ENSMUST00000067085|ref|XM_006512818|ref|XM_006512819 chr10:52124332-52124391 mm|10qB3 Mus musculus nephrocan (Nepn), mRNA [NM_025684] GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0003674(molecular_function)|GO:0005578(proteinaceous extracellular matrix)|GO:0005614(interstitial matrix)|GO:0005615(extracellular space)|GO:0030198(extracellular matrix organization)|GO:0030512(negative regulation of transforming growth factor beta receptor signaling pathway) GCTTCTTTCCTGGTTTGAAACAAGTTGTGTTTTAGTCTGAAACTTAGGCAAATAACAATG
7 192 316 A_55_P2419483 FALSE AK084197 320929 4732460I02Rik RIKEN cDNA 4732460I02 gene Mm.183114 gb|AK084197|tc|TC1598095|riken|D230007J06|nap|NAP100807-001 chrX:54630198-54630139 mm|XqA5 Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230007J06 product:unclassifiable, full insert sequence. [AK084197] CATCTATTCCAAAACTCATATTAGATTTTGAAGATGGTCATGCAGCTTTGTAAACTTGCC
8 192 314 A_55_P2739683 FALSE AK184380 75734 Mff mitochondrial fission factor Mm.396863 gb|AK184380 chr1:82727811-82743670 mm|1qC5 Mus musculus cDNA, clone:Y0G0129M03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027332, based on BLAT search. [AK184380] GO:0000266(mitochondrial fission)|GO:0005515(protein binding)|GO:0005739(mitochondrion)|GO:0005741(mitochondrial outer membrane)|GO:0005777(peroxisome)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0030054(cell junction)|GO:0031410(cytoplasmic vesicle)|GO:0045202(synapse)|GO:0070584(mitochondrion morphogenesis) ATTTCCTGGATTTAGAAAGACCACTTCCAACTCCTCAAAGCGAAGAGACCTGTGTTGCGT
9 192 312 A_51_P211903 FALSE NM_013747 NM_013747 27277 Golga5 golgi autoantigen, golgin subfamily a, 5 Mm.273370 ENSMUST00000179218 ref|NM_013747|ref|NM_001199004|ens|ENSMUST00000179218|ens|ENSMUST00000021609 chr12:103735935-103735994 mm|12qE Mus musculus golgi autoantigen, golgin subfamily a, 5 (Golga5), transcript variant 2, mRNA [NM_013747] GO:0000137(Golgi cis cisterna)|GO:0000138(Golgi trans cisterna)|GO:0000139(Golgi membrane)|GO:0000301(retrograde transport, vesicle recycling within Golgi)|GO:0005515(protein binding)|GO:0005794(Golgi apparatus)|GO:0005797(Golgi medial cisterna)|GO:0005801(cis-Golgi network)|GO:0007030(Golgi organization)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0017137(Rab GTPase binding)|GO:0030663(COPI coated vesicle membrane)|GO:0030674(protein binding, bridging)|GO:0031985(Golgi cisterna)|GO:0042803(protein homodimerization activity)|GO:0048193(Golgi vesicle transport) ATTAAGCTCAACTTTTTCTGAGTTCAGTTCCCTAGATATGTATAGAGAAAGAGAAAAGGC
10 192 310 A_66_P121325 FALSE AK182395 Mm.927 gb|AK182395|gb|CK329884|tc|TC1740766|tc|TC1739897 chr7:138715358-138715299 mm|7qF3 Mus musculus cDNA, clone:Y0G0121M24, strand:unspecified. [AK182395] GCACAGGTGGCACACAAGGGGTAGGAGACACATTTAGGGACAGAGGGACAGCCAAACGGA
11 192 308 A_51_P226429 FALSE NM_153514 NM_153514 246710 Rhobtb2 Rho-related BTB domain containing 2 Mm.102367 ENSMUST00000022665 ref|NM_153514|ens|ENSMUST00000022665|ref|XM_006519023|gb|AK081100 chr14:70185082-70185023 mm|14qD2 Mus musculus Rho-related BTB domain containing 2 (Rhobtb2), mRNA [NM_153514] GO:0000166(nucleotide binding)|GO:0005515(protein binding)|GO:0005525(GTP binding)|GO:0005575(cellular_component)|GO:0005622(intracellular)|GO:0007264(small GTPase mediated signal transduction) AGAGGGAGGTGCTGCTTGCAGTCCCTTAGTACATGGGTGCTCTGGATTCCAGGGAGACAA
12 192 306 A_55_P2841743 FALSE XR_877215 XR_877215 102641432 Gm38559 predicted gene, 38559 Mm.421268 ref|XR_877215|ref|XR_883925|ref|XR_397846|ref|XR_877216 chr18:24084895-24084954 mm|18qA2 PREDICTED: Mus musculus uncharacterized LOC102641432 (LOC102641432), transcript variant X2, ncRNA [XR_877215] CATAAGGAGACCTTTTGTCAAACCACATAACTCTGGCTTGTTTATGAGCTCTAAAATTAA
13 192 304 A_55_P2737159 FALSE NM_001198823 NM_001198823 11820 App amyloid beta (A4) precursor protein Mm.277585 ref|NM_001198823|ref|NM_001198826|ref|NM_001198824|ref|NM_001198825 chr16:84954771-84954712 mm|16qC3.3 Mus musculus amyloid beta (A4) precursor protein (App), transcript variant 1, mRNA [NM_001198823] GO:0001967(suckling behavior)|GO:0003677(DNA binding)|GO:0004867(serine-type endopeptidase inhibitor activity)|GO:0005102(receptor binding)|GO:0005515(protein binding)|GO:0005615(extracellular space)|GO:0005622(intracellular)|GO:0005623(cell)|GO:0005641(nuclear envelope lumen)|GO:0005737(cytoplasm)|GO:0005768(endosome)|GO:0005790(smooth endoplasmic reticulum)|GO:0005794(Golgi apparatus)|GO:0005886(plasma membrane)|GO:0005905(coated pit)|GO:0005911(cell-cell junction)|GO:0006378(mRNA polyadenylation)|GO:0006417(regulation of translation)|GO:0006468(protein phosphorylation)|GO:0006878(cellular copper ion homeostasis)|GO:0006897(endocytosis)|GO:0006915(apoptotic process)|GO:0006979(response to oxidative stress)|GO:0007155(cell adhesion)|GO:0007176(regulation of epidermal growth factor-activated receptor activity)|GO:0007219(Notch signaling pathway)|GO:0007399(nervous system development)|GO:0007409(axonogenesis)|GO:0007617(mating behavior)|GO:0007626(locomotory behavior)|GO:0008088(axon cargo transport)|GO:0008201(heparin binding)|GO:0008203(cholesterol metabolic process)|GO:0008344(adult locomotory behavior)|GO:0008542(visual learning)|GO:0009986(cell surface)|GO:0010466(negative regulation of peptidase activity)|GO:0010468(regulation of gene expression)|GO:0010951(negative regulation of endopeptidase activity)|GO:0010952(positive regulation of peptidase activity)|GO:0010971(positive regulation of G2/M transition of mitotic cell cycle)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016199(axon midline choice point recognition)|GO:0016322(neuron remodeling)|GO:0016358(dendrite development)|GO:0016504(peptidase activator activity)|GO:0019899(enzyme binding)|GO:0030134(ER to Golgi transport vesicle)|GO:0030198(extracellular matrix organization)|GO:0030414(peptidase inhibitor activity)|GO:0030424(axon)|GO:0030900(forebrain development)|GO:0031175(neuron projection development)|GO:0031410(cytoplasmic vesicle)|GO:0031594(neuromuscular junction)|GO:0033130(acetylcholine receptor binding)|GO:0035235(ionotropic glutamate receptor signaling pathway)|GO:0035253(ciliary rootlet)|GO:0040014(regulation of multicellular organism growth)|GO:0042802(identical protein binding)|GO:0043005(neuron projection)|GO:0043195(terminal button)|GO:0043231(intracellular membrane-bounded organelle)|GO:0043235(receptor complex)|GO:0043393(regulation of protein binding)|GO:0045121(membrane raft)|GO:0045177(apical part of cell)|GO:0045665(negative regulation of neuron differentiation)|GO:0045931(positive regulation of mitotic cell cycle)|GO:0045944(positive regulation of transcription from RNA polymerase II promoter)|GO:0046872(metal ion binding)|GO:0046914(transition metal ion binding)|GO:0048471(perinuclear region of cytoplasm)|GO:0048669(collateral sprouting in absence of injury)|GO:0050803(regulation of synapse structure and activity)|GO:0050885(neuromuscular process controlling balance)|GO:0051124(synaptic growth at neuromuscular junction)|GO:0051233(spindle midzone)|GO:0051260(protein homooligomerization)|GO:0051402(neuron apoptotic process)|GO:0051425(PTB domain binding) CAGGATGATTGTACAGAATCATTGCTTATGCCATGATAGCTTTCTACACTGTATTACATA
14 192 302 A_55_P2728466 FALSE NM_026655 NM_026655 68277 2310057M21Rik RIKEN cDNA 2310057M21 gene Mm.121122 ENSMUST00000059438 ref|NM_026655|ens|ENSMUST00000059438|ref|XM_011241888|ref|XM_011241889 chr7:138486811-138486752 mm|7qF3 Mus musculus RIKEN cDNA 2310057M21 gene (2310057M21Rik), mRNA [NM_026655] GO:0005575(cellular_component)|GO:0008150(biological_process)|GO:0042802(identical protein binding) GGACTTCTAATGCACTTCGTTAGCTTGTGTTGTATATTACATGTGTTTGAAGTGGATTTT
15 192 300 A_55_P2101526 FALSE NM_001081202 NM_001081202 381591 L1td1 LINE-1 type transposase domain containing 1 Mm.34340 ENSMUST00000154279 ref|NM_001081202|ens|ENSMUST00000154279|gb|AB211064|tc|TC1582566 chr4:98405084-98405143 mm|4qC6 Mus musculus LINE-1 type transposase domain containing 1 (L1td1), mRNA [NM_001081202] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) GAAGAGACTGCAGGCTGACTGACTCAACAAGATTACATTGCTTTATTATTTACTATTACA
16 192 298 A_52_P1132414 FALSE AK082550 Mm.447682 gb|AK082550|tc|TC1605974|riken|C230062N18 chr11:108041625-108041566 mm|11qE1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230062N18 product:unclassifiable, full insert sequence. [AK082550] GTGGGACGGTCTATTGTTTTATCTGGTACTCATTCAGTGTATCTATCTTTATAAGCCAAC
17 192 296 A_66_P135936 FALSE NM_007907 NM_007907 13629 Eef2 eukaryotic translation elongation factor 2 Mm.326799 ENSMUST00000047864 ref|NM_007907|ens|ENSMUST00000047864|gb|AK195498|gb|AK190272 chr10:80645059-80645118 mm|10qC1 Mus musculus eukaryotic translation elongation factor 2 (Eef2), mRNA [NM_007907] GO:0000166(nucleotide binding)|GO:0002244(hemopoietic progenitor cell differentiation)|GO:0003746(translation elongation factor activity)|GO:0003924(GTPase activity)|GO:0005515(protein binding)|GO:0005525(GTP binding)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005844(polysome)|GO:0005886(plasma membrane)|GO:0006412(translation)|GO:0006414(translational elongation)|GO:0016020(membrane)|GO:0016235(aggresome)|GO:0019901(protein kinase binding)|GO:0030529(ribonucleoprotein complex)|GO:0045727(positive regulation of translation)|GO:0070062(extracellular vesicular exosome) CGCGCAGATGTCCAAAAGTCTAAATAAATGCATTCAGAGGTTTTTGGGGTCCATGGCCAA
18 192 294 A_55_P2805396 FALSE NM_008209 NM_008209 15064 Mr1 major histocompatibility complex, class I-related Mm.7580 ENSMUST00000027744 ref|NM_008209|ens|ENSMUST00000027744|ens|ENSMUST00000191773|ens|ENSMUST00000194612 chr1:156975091-156975032 mm|1qG3 Mus musculus major histocompatibility complex, class I-related (Mr1), mRNA [NM_008209] GO:0002367(cytokine production involved in immune response)|GO:0002376(immune system process)|GO:0002474(antigen processing and presentation of peptide antigen via MHC class I)|GO:0003823(antigen binding)|GO:0005783(endoplasmic reticulum)|GO:0005886(plasma membrane)|GO:0006955(immune response)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0019882(antigen processing and presentation)|GO:0032611(interleukin-1 beta production)|GO:0032620(interleukin-17 production)|GO:0042605(peptide antigen binding)|GO:0042612(MHC class I protein complex)|GO:0045087(innate immune response)|GO:0050829(defense response to Gram-negative bacterium) CACCACCACCACTAATAACAAACAAAAACTAAAACTTTGGATCTTTCTTCTGTAAGTGGT
19 192 292 A_55_P2717104 FALSE BY593315 22325 Vav2 vav 2 oncogene Mm.487557 ENSMUST00000146843 ens|ENSMUST00000146843|gb|BY593315 chr2:27125327-27125268 mm|2qA3 vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718] [ENSMUST00000146843] GO:0001525(angiogenesis)|GO:0005085(guanyl-nucleotide exchange factor activity)|GO:0005089(Rho guanyl-nucleotide exchange factor activity)|GO:0005154(epidermal growth factor receptor binding)|GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0007264(small GTPase mediated signal transduction)|GO:0010468(regulation of gene expression)|GO:0016477(cell migration)|GO:0030031(cell projection assembly)|GO:0030032(lamellipodium assembly)|GO:0030193(regulation of blood coagulation)|GO:0035023(regulation of Rho protein signal transduction)|GO:0035556(intracellular signal transduction)|GO:0043547(positive regulation of GTPase activity)|GO:0043552(positive regulation of phosphatidylinositol 3-kinase activity)|GO:0046872(metal ion binding) ACACTAAAATAGTTGATTTTGACCTCCACCACTCCCTTTTGGTACTAGCACAGAGCCCAG
20 192 290 A_55_P2909714 FALSE NM_153560 NM_153560 98952 Fam102a family with sequence similarity 102, member A Mm.4065 ENSMUST00000048375 ref|NM_153560|ens|ENSMUST00000048375|ens|ENSMUST00000136816|gb|BC024513 chr2:32425212-32425270 mm|2qB Mus musculus family with sequence similarity 102, member A (Fam102a), mRNA [NM_153560] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) AAATCAGCCTAGTGTCAATGTTTGGTTTGGGGGTGGAATTAAATGCCGATGTTTTTGTTA

Total number of rows: 62976

Table truncated, full table size 43529 Kbytes.




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