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Platform GPL21853 Query DataSets for GPL21853
Status Public on May 11, 2016
Title 065940 Arraystar Mouse ncRNA Promoter Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-065940
MM9
Arraystar Mouse 4x180 K ncRNA Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor (TF) binding sites within 18,552 LncRNA promoter regions by using 60-mer tiling probes at approximately 165 bp spacing. In addition, our Mouse ncRNA Promoter Array can also interrogate 346 miRNA promoters. Further, probes for positive, negative are included to facilitate experimental performance assessment.

18552 LncRNA promoters (from -1300 to +500 bp) & 346 miRNA promoters (host gene?s promoter or from -50 kb to miRNA)
 
Submission date May 10, 2016
Last update date May 11, 2016
Contact name Panos Pan
E-mail(s) panosp@arraystar.com
Phone 888-416-6343
Organization name Arraystar Inc.
Street address 9430 Key West Avenue
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID probeID
CONTROL_TYPE
BUILD
Chromosome
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE
SPOT_ID

Data table
ID CONTROL_TYPE BUILD Chromosome RANGE_GB RANGE_START RANGE_END SEQUENCE SPOT_ID
MmCGHBrightCorner pos control
DarkCorner2 pos control
Ch_841392_0049822 FALSE MM9 chr16 NC_000082.5 44746043 44746087 GGTGACAGGAAATGAGCACAGGCCGACTCAGGCTCTCGCACCTAC
Ch_841392_0076387 FALSE MM9 chr2 NC_000068.6 16674956 16675011 CTTTTAGGGCAAGATAAGGATGCTTTCGTGTACTTTGGCAATAATCATGGCTTCTA
Ch_841392_0090730 FALSE MM9 chr2 NC_000068.6 173873604 173873651 CTGCTCTCCCAGGGATGGACTGTGACCTAGAAGTCTAAGAGAAATAAA
Ch_841392_0099946 FALSE MM9 chr3 NC_000069.5 146424951 146425010 CTCTATAAGTGTAGTTTAAGAATCACTCAGTTTTCATACACATGGTTCTCCTTCCTCTTC
Ch_841392_0142061 FALSE MM9 chr7 NC_000073.5 126112564 126112608 GACCACATTTGCGAGCCATCTCACAGGTCTGAAGTTCCACTTGAT
Ch_841392_0016367 FALSE MM9 chr11 NC_000077.5 95698027 95698071 TTGCCTGGCCTGCGTGGAGGGCATTTATTAATCATTGGATGTGTT
Ch_841392_0080745 FALSE MM9 chr2 NC_000068.6 69723288 69723332 ATGAACCAGCCGCCCTACCTGCAATGTGCGGCCTGGTGGGATACT
Ch_841392_0126775 FALSE MM9 chr6 NC_000072.5 54766691 54766735 GACGGTTGCCGGGGCGCGCGCCGCCCGTTCCTCTTTCCCGTTGCA
Ch_841392_0138350 FALSE MM9 chr7 NC_000073.5 74856816 74856860 CAAATACCTCCCCGTCGGAGAGATGTAGTGAGCACAGGTTTGTCG
Ch_841392_0170418 FALSE MM9 chrX NC_000086.6 150675089 150675148 CACTTAATTATTTTTTGATTCTGGAATATACTGAAGGCCAGCTGAAAAATCTAGCTTATT
Ch_841392_0130501 FALSE MM9 chr6 NC_000072.5 128133504 128133548 AGCCAGACAAGTATGCAGGCCTGACACGACAGCTTCTATCCTCAA
Ch_841392_0068731 FALSE MM9 chr1 NC_000067.5 63083723 63083782 TACTCATGTTATATGGGCTTCCAAATGTATATACAGCACAACACAAAAACAATAATATTA
Ch_841392_0132961 FALSE MM9 chr7 NC_000073.5 12590486 12590545 CACTGGAAAGCATTTAATCTCTAAAGACCTGATTATAAAGCACTTGAATTTTGCTAACTG
Ch_841392_0148086 FALSE MM9 chr8 NC_000074.5 73301134 73301178 CACTGCCATGACAACCCTAGGCGTCCGGAAACAGCCGAAGTGTCT
Ch_841392_0165914 FALSE MM9 chrX NC_000086.6 98904432 98904476 CAGCACTAGCCTTTGCCTCCTTGGCCTGGGGCTCTTGGCTCTCAG
Ch_841392_0002097 FALSE MM9 chr10 NC_000076.5 51386703 51386762 GTATCCATAAACCCATCCATATTTATTGTGTTCCTGCTACATCTCAGAACTACAAAAAGA
Ch_841392_0018630 FALSE MM9 chr11 NC_000077.5 112571740 112571795 GAACAAACAAAGAGCAGAACAAAGAAGAGTGAGGCTCTTACAAAGAATTCCCAAAA
Ch_841392_0113246 FALSE MM9 chr4 NC_000070.5 148288331 148288375 GTTGGGAAGCGGCGCACAGTGTGTCCTTGTTAGCCTACAGGCTTC

Total number of rows: 172710

Table truncated, full table size 19554 Kbytes.




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