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Platform GPL21980 Query DataSets for GPL21980
Status Public on Jun 08, 2016
Title [HG-U133_Plus_2] GeneNet Human 216K lentiviral shRNA Library
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Human Genome U133 Plus 2.0 GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G. GeneNet Library Data Analysis Software (System Biosciences) was used to generate expression values for individual shRNAs by comparing the background-corrected and normalized signal values for each shRNA in LEN-treated and control samples. Annotation can be found in H50_no_x_lib.dat file.
 
Submission date Jun 03, 2016
Last update date Jun 08, 2016
Contact name Jing Fang
Organization name University of South Carolina
Department Drug Discovery and Biomedical Sciences
Street address 715 Sumter Street
City Columbia
State/province SC
ZIP/Postal code 29208
Country USA
 
Samples (4) GSM2186940, GSM2186941, GSM2186942, GSM2186943
Series (1)
GSE82235 A calcium- and calpain-dependent pathway determines the response to lenalidomide in myelodysplastic syndromes

Data table header descriptions
ID
Description
Gene Name
SEQUENCE
Probe id
Entrez Gene
GB_LIST GenBank Accession number
REFSEQ
SPOT_ID

Data table
ID Description Gene Name SEQUENCE Probe id Entrez Gene GB_LIST REFSEQ SPOT_ID
1 AW449433 EST AATTGCATCCAAGAACTGTAGTACAAT 240787_at --- --- AW449433
2 AB023231 Homo sapiens mRNA for KIAA1014 protein, partial cds. AGTGGTTTACCTCGTGCTGATAGATGG 212232_at 23360 NM_015308 NM_015308
3 BE646231 immunoglobulin heavy constant gamma 3 (G3m marker) CAAAGTGCCATAGCGACATCCAGAACA 225587_at 92305 NM_138385 NM_138385
4 g6180181 Homo sapiens Delta-like-1 protein (DLL1) mRNA, complete cds. GAGAAACCGAGTTCAGACCGAGCAGGT 224215_s_at 28514 NM_005618 NM_005618
5 AA527340 homeo box B6 GGCACTGAGCCTGTTTCACAGATCCTA 205365_at 3216 NM_018952 NM_018952
6 g10835144 Homo sapiens interleukin 1, beta (IL1B), mRNA. AGCTGTACCCAGAGAGTCCTGTGCTGA 205067_at 3553 NM_000576 NM_000576
7 BE551347 hypothetical protein FLJ1305 AGGGCAGCGGAAGGATTCGGGCCTGGA 213613_s_at 985 NM_024011 NM_033527 NM_033528 NM_033529 NM_033531 NM_033532 NM_033534 NM_033536 NM_033537 XM_001125937 NM_024011 /// NM_033527 /// NM_033528 /// NM_033529 /// NM_033531 /// NM_033532 /// NM_033534 /// NM_033536 /// NM_033537 /// XM_001125937
8 g11545758 Homo sapiens reserved (KCNK13), mRNA. TGCCCGCAATGCCAGAGAGGACTCTTG 221325_at 56659 NM_022054 NM_022054
9 AU146310 Homo sapiens cDNA FLJ11909 fis, clone HEMBB1000099 CCGTGATATTCAACGTAATGGCATAAT 1556849_at 152006 NM_022781 NM_194328 NM_194329 NM_194330 NM_194332 NM_022781 /// NM_194328 /// NM_194329 /// NM_194330 /// NM_194332
10 g8922566 Homo sapiens hypothetical protein FLJ10647 (FLJ10647), mRNA. CGCAGCGGCTGGAGGAGCGCGAACGGA 220134_x_at 55194 NM_018166 NM_018166
11 g13623280 Homo sapiens, hypothetical protein FLJ10647, clone MGC:11318, mRNA, complete cds. CGCAGCGGCTGGAGGAGCGCGAACGGA 221710_x_at 55194 NM_018166 NM_018166
12 AW514174 KIAA0217 protei TGGCAATGCGGCATTCTCATGGCCCTG 214215_s_at 23185 NM_015155 NM_015155
13 g7706122 Homo sapiens neuritin (LOC51299), mRNA. GTCCACGGCCGAAACATACGGTGAATA 218625_at 51299 NM_016588 NM_016588
14 AK022078 Homo sapiens cDNA FLJ12016 fis, clone HEMBB1001707 AGGAGCCGTATAACGCTGTGCTGTAGC 233921_s_at 8379 NM_001013836 NM_001013837 NM_003550 NM_001013836 /// NM_001013837 /// NM_003550
15 AI702480 H.sapiens mRNA for CD77 protei ATCCACTATCCTGTAGAGAAATCCAGA 1565923_at 10050 NM_005495 NM_005495
16 AI081194 KIAA0379 protei CTTCCTTTGGTCTGCACCCAATGAAGG 213035_at 23243 NM_015199 NM_015199
17 g13528851 Homo sapiens, serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3, clone MGC:12244, mRNA, complete cds. GCAACAACAGATTCTCTTGGCTCATAT 209720_s_at 6317 NM_006919 NM_006919
18 BF056517 KIAA1264 protei AGAGAGCAACAGCCCAGGAACTCCTCG 213990_s_at 57144 NM_020341 NM_177990 NM_020341 /// NM_177990
19 g4505386 Homo sapiens nuclear transcription factor, X-box binding 1 (NFX1), mRNA. CTTCCCTCCCATGAACAGAGACCACCG 202585_s_at 4799 NM_002504 NM_147133 NM_147134 NM_002504 /// NM_147133 /// NM_147134
20 g2558667 Homo sapiens eukaryotic translation initiation factor (eIF3) mRNA, complete cds. CTGTACACAGCCGAGCAGCATTTCCGT 208688_x_at 8662 NM_001037283 NM_003751 NM_001037283 /// NM_003751

Total number of rows: 216351

Table truncated, full table size 30821 Kbytes.




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Supplementary file Size Download File type/resource
GPL21980_H50_no_x_lib.dat.txt.gz 5.4 Mb (ftp)(http) TXT

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