NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL22065 Query DataSets for GPL22065
Status Public on Jun 23, 2016
Title Agilent-071899 Ustilago maydis and maize custom array 069384
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Zea mays; Mycosarcoma maydis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description U. maydis orfs (sense and antisense), Zea mays agilent chip, constitutive gene control group of U. maydis, 26 genes replicated

Arrays of this design have barcodes that begin with 16071899 or 2571899.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 21, 2016
Last update date Jun 23, 2016
Contact name Armin Djamei
E-mail(s) armin.djamei@gmi.oeaw.ac.at
Organization name Gregor Mendel Institute of Molecular Plant Biology GmbH
Lab Djamei
Street address Dr. Bohr-Gasse 3
City Vienna
ZIP/Postal code 1030
Country Austria
 
Samples (6) GSM2209809, GSM2209810, GSM2209811, GSM2209812, GSM2209813, GSM2209814
Series (1)
GSE83576 Global transcriptional profiling of SG200 and the SA sensing mutant SG200∆rss1 during biotrophic growth

Data table header descriptions
ID Agilent feature number
PROBE_ID
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
ORF
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID PROBE_ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING ORF SEQUENCE SPOT_ID
CUST_1_PI429965799 CUST_1_PI429965799 FALSE um00001 um00001 TTTATGAATGCTTTTCCCTGCATCTTCGTCTCGAATCTCTCCAATTCGGTCGCCTTCTAT
CUST_1_PI429965802 CUST_1_PI429965802 FALSE um00001 um00001 AATTGGAGAGATTCGAGACGAAGATGCAGGGAAAAGCATTCATAAAGACGGTCTTGCCTG
CUST_2_PI429965799 CUST_2_PI429965799 FALSE um00002 um00002 CATTTTCACCGGTGATGAAGAGCTGTTTGCTTTCGCAAGAGTCATTTCGAGACTCACAGA
CUST_2_PI429965802 CUST_2_PI429965802 FALSE um00002 um00002 AACAAGCCTTTGGATGCTTCTAAGTGCTCTTCAGGATCTGGTACGTCAGCCTGCTTATAA
CUST_3_PI429965799 CUST_3_PI429965799 FALSE um00003 um00003 TAGGATTGACCTTGTTGAATGGATGCGTCTGTCTCTTCAACTTCAACCAAGGGTTGAAGC
CUST_3_PI429965802 CUST_3_PI429965802 FALSE um00003 um00003 AAGATTGTCCACTTGCGTAACGATACGGGCAAAAATGAAGGCGACAAGGGTGATAACGAT
CUST_4_PI429965799 CUST_4_PI429965799 FALSE um00005 um00005 AACAGGTCGATTACTGCTCAGCGGTTCAGATTATCAACGAACGAGGAGAATTTTCTGGCA
CUST_4_PI429965802 CUST_4_PI429965802 FALSE um00005 um00005 ATTTGGAGCGATACGGACGAATTTGCCATACTTCTGATGCTGTTTGTGAACCTCCTCGAA
CUST_5_PI429965799 CUST_5_PI429965799 FALSE um00006 um00006 TCGTCATCTAAGTCTTCATCGACGACGATGGCGTTCTTGCAACAAGTGTTTGGTATGCTT
CUST_5_PI429965802 CUST_5_PI429965802 FALSE um00006 um00006 GGAAGATTCGATGATGGGCGAAGATCGGGACATTCCAAATGAAGGTCGTCGAGGTGCCAT
CUST_6_PI429965799 CUST_6_PI429965799 FALSE um00007 um00007 TATCCTTTTCAACTTTGTCTCATTCTTCGGATGGGTCGTCGTGCTCTCGACGTTGATCAA
CUST_6_PI429965802 CUST_6_PI429965802 FALSE um00007 um00007 AATGAGACAAAGTTGAAAAGGATAAGATAGTACTTGATAGGAGCGGCCGGACCACGCTTG
CUST_7_PI429965799 CUST_7_PI429965799 FALSE um00008 um00008 ATTCTTGCATCTACACAAAGTCGTTGAGGAAGACGTCTTTCGTAACGGTCCTGAAGCTCA
CUST_7_PI429965802 CUST_7_PI429965802 FALSE um00008 um00008 AAGGATTCGATTGAGCCGTCAACGTGCTAGTGGAGAGTGGTCTACATGATACCAAATCTT
CUST_8_PI429965799 CUST_8_PI429965799 FALSE um00009 um00009 TAGAAAACATTCATTACCTTGGAGACGATCTATGGTTGACGCTGGCCAAAGGTGGCATCT
CUST_8_PI429965802 CUST_8_PI429965802 FALSE um00009 um00009 TCATAGTGCTGAAAGAAGAGCACCTGCTTGTCGGAAATAAGCATCTGTACATGCTCCCTT
CUST_9_PI429965799 CUST_9_PI429965799 FALSE um00011 um00011 ACTTCGCATGATGCCTACCATCATATCTTTTACACTGGCTGCTGGAACATGATGGACATG
CUST_9_PI429965802 CUST_9_PI429965802 FALSE um00011 um00011 AGAAATGGCTTCATCAAAGAAGATCTCGGTGAGGCAGTTGGTGAGTTGATGTGCAATGCT
CUST_10_PI429965799 CUST_10_PI429965799 FALSE um00012 um00012 ACCGTCAGGAGAGGCACCGTCGACGGAGAGACAGGTGAAACCATCGAAATTCTTTCCTGA
CUST_10_PI429965802 CUST_10_PI429965802 FALSE um00012 um00012 CTGTCGACTAGTGGAAGCAACGTTGCGTGCCACAGCTGAGGCAATCGTTCTTGCAGACAT

Total number of rows: 57970

Table truncated, full table size 7132 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL22065_custom_Agilent_Array_design_ID_071899.txt.gz 2.4 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap