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Status
Public on Jan 01, 2017
Title
Agilent-027382 Danio_Rerio_TF_V2 [Feature Number version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio
Manufacturer
Agilent Technologies
Manufacture protocol
See manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16027382 or 2527382. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 24, 2016
Last update date
Jan 01, 2017
Contact name
Samantha Jane England
E-mail(s)
sjenglan@syr.edu
Phone
315 443 1929
Organization name
Syracuse University
Department
Biology
Lab
Lewis Lab
Street address
107 College Place
City
Syracuse
State/province
NY
ZIP/Postal code
13244
Country
USA
Relations
Alternative to
GPL22083
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
Name
CONTROL_TYPE
Control type
GB_ACC
RefSeq accession
UNIGENE
UniGene cluster ID
ENSEMBL_ID
Ensembl ID
ACCESSION_STRING
Accession string
CHROMOSOMAL_LOCATION
Chromosomal location
SEQUENCE
Sequence
SPOT_ID
Spot identifier
Data table
ID
COL
ROW
NAME
CONTROL_TYPE
GB_ACC
UNIGENE
ENSEMBL_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID
1
266
170
GE_BrightCorner
pos
--GE_BrightCorner
2
266
168
DarkCorner
pos
--DarkCorner
3
266
166
DarkCorner
pos
--DarkCorner
4
266
164
DarkCorner
pos
--DarkCorner
5
266
162
DarkCorner
pos
--DarkCorner
6
266
160
DarkCorner
pos
--DarkCorner
7
266
158
DarkCorner
pos
--DarkCorner
8
266
156
DarkCorner
pos
--DarkCorner
9
266
154
DarkCorner
pos
--DarkCorner
10
266
152
DarkCorner
pos
--DarkCorner
11
266
150
DarkCorner
pos
--DarkCorner
12
266
148
CUST_5594_PI423952288
FALSE
ENSDART00000061616
ens|ENSDART00000061616
unmapped
GCTTTTAAATTGCTGTCGTGTGTTACGGAGCGGGAATTCCTATTCCTAACATCAGTGTGC
ENSDART00000061616
13
266
146
CUST_4023_PI424165604
FALSE
ENSDART00000104612
ens|ENSDART00000104612
unmapped
AGAGGCCTGTATTTCAAATGTTGATGTTGGTTGGTGGTAAATTTCTGACTTTGTTTATTC
ENSDART00000104612
14
266
144
CUST_4034_PI424165564
FALSE
ENSDART00000058941
ens|ENSDART00000058941
unmapped
TTGAGAAATGTGAAAATATGAAGGCCAGGAAGATGCATCACTCTGCGACGGTTGTGAACG
ENSDART00000058941
15
266
142
CUST_495_PI424165052
FALSE
ENSDART00000064546
ens|ENSDART00000064546
unmapped
GTTGCATCAATCAGAGCGTCTGCGTCTCCAACAACTCTAATCTAATCTAATGATCAACTG
ENSDART00000064546
16
266
140
CUST_1622_PI423953333
FALSE
ENSDART00000106499
ens|ENSDART00000106499
unmapped
AGTTCATGCAGACGAGAAGCCGTACACGTGTTCTTGGTGTGGAAAGTTCTTTTCCTATCA
ENSDART00000106499
17
266
138
CUST_2653_PI424165564
FALSE
ENSDART00000054243
ens|ENSDART00000054243
unmapped
TAGGGCCCATGTTTCAGATGACTGAGCACCTGTTTATGCATTGCCAAATATTCTTTTTTA
ENSDART00000054243
18
266
136
CUST_602_PI424165052
FALSE
ENSDART00000077945
ens|ENSDART00000077945
unmapped
CTGCGATTCCTGTCCAATCAAATCACACAGAGAAAGTAAATTGCACCATACTGAACAACC
ENSDART00000077945
19
266
134
CUST_1027_PI424165052
FALSE
ENSDART00000108612
ens|ENSDART00000108612
unmapped
TCCTTCATCATCTGCTCCAGTCTTTACTCTGAGCTCCATTTGGCTTTCAAGAGTCCAGAT
ENSDART00000108612
20
266
132
CUST_3181_PI424165973
FALSE
Dr.151110
Dr.151110
unmapped
TACAAATGACGTTTACTGAAGAACACTGCAGGAAAAACAAAAAGACATATTTACAGGTGC
Total number of rows: 45220 Table truncated, full table size 7034 Kbytes .
Supplementary data files not provided