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Platform GPL22082 Query DataSets for GPL22082
Status Public on Jan 01, 2017
Title Agilent-027382 Danio_Rerio_TF_V2 [Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16027382 or 2527382.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 24, 2016
Last update date Jan 01, 2017
Contact name Samantha Jane England
E-mail(s) sjenglan@syr.edu
Phone 315 443 1929
Organization name Syracuse University
Department Biology
Lab Lewis Lab
Street address 107 College Place
City Syracuse
State/province NY
ZIP/Postal code 13244
Country USA
 
Relations
Alternative to GPL22083

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
CONTROL_TYPE Control type
GB_ACC RefSeq accession
UNIGENE UniGene cluster ID
ENSEMBL_ID Ensembl ID
ACCESSION_STRING Accession string
CHROMOSOMAL_LOCATION Chromosomal location
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE GB_ACC UNIGENE ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos --GE_BrightCorner
2 266 168 DarkCorner pos --DarkCorner
3 266 166 DarkCorner pos --DarkCorner
4 266 164 DarkCorner pos --DarkCorner
5 266 162 DarkCorner pos --DarkCorner
6 266 160 DarkCorner pos --DarkCorner
7 266 158 DarkCorner pos --DarkCorner
8 266 156 DarkCorner pos --DarkCorner
9 266 154 DarkCorner pos --DarkCorner
10 266 152 DarkCorner pos --DarkCorner
11 266 150 DarkCorner pos --DarkCorner
12 266 148 CUST_5594_PI423952288 FALSE ENSDART00000061616 ens|ENSDART00000061616 unmapped GCTTTTAAATTGCTGTCGTGTGTTACGGAGCGGGAATTCCTATTCCTAACATCAGTGTGC ENSDART00000061616
13 266 146 CUST_4023_PI424165604 FALSE ENSDART00000104612 ens|ENSDART00000104612 unmapped AGAGGCCTGTATTTCAAATGTTGATGTTGGTTGGTGGTAAATTTCTGACTTTGTTTATTC ENSDART00000104612
14 266 144 CUST_4034_PI424165564 FALSE ENSDART00000058941 ens|ENSDART00000058941 unmapped TTGAGAAATGTGAAAATATGAAGGCCAGGAAGATGCATCACTCTGCGACGGTTGTGAACG ENSDART00000058941
15 266 142 CUST_495_PI424165052 FALSE ENSDART00000064546 ens|ENSDART00000064546 unmapped GTTGCATCAATCAGAGCGTCTGCGTCTCCAACAACTCTAATCTAATCTAATGATCAACTG ENSDART00000064546
16 266 140 CUST_1622_PI423953333 FALSE ENSDART00000106499 ens|ENSDART00000106499 unmapped AGTTCATGCAGACGAGAAGCCGTACACGTGTTCTTGGTGTGGAAAGTTCTTTTCCTATCA ENSDART00000106499
17 266 138 CUST_2653_PI424165564 FALSE ENSDART00000054243 ens|ENSDART00000054243 unmapped TAGGGCCCATGTTTCAGATGACTGAGCACCTGTTTATGCATTGCCAAATATTCTTTTTTA ENSDART00000054243
18 266 136 CUST_602_PI424165052 FALSE ENSDART00000077945 ens|ENSDART00000077945 unmapped CTGCGATTCCTGTCCAATCAAATCACACAGAGAAAGTAAATTGCACCATACTGAACAACC ENSDART00000077945
19 266 134 CUST_1027_PI424165052 FALSE ENSDART00000108612 ens|ENSDART00000108612 unmapped TCCTTCATCATCTGCTCCAGTCTTTACTCTGAGCTCCATTTGGCTTTCAAGAGTCCAGAT ENSDART00000108612
20 266 132 CUST_3181_PI424165973 FALSE Dr.151110 Dr.151110 unmapped TACAAATGACGTTTACTGAAGAACACTGCAGGAAAAACAAAAAGACATATTTACAGGTGC

Total number of rows: 45220

Table truncated, full table size 7034 Kbytes.




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