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Platform GPL22110 Query DataSets for GPL22110
Status Public on Jul 06, 2016
Title Agilent-024757 human promoter and stress-related genes array (Feature number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Annotations based on hg19:GRCh37:Feb2009


Arrays of this design have barcodes that begin with 16024757 or 2524757.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 05, 2016
Last update date Jul 19, 2016
Contact name Moshe Szyf
E-mail(s) moshe.szyf@mcgill.ca
Organization name McGill University
Department Pharmacology
Street address McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
City Montreal
State/province Quebec
ZIP/Postal code H3G 1Y6
Country Canada
 
Samples (18) GSM2225695, GSM2225696, GSM2225697, GSM2225698, GSM2225699, GSM2225700 
Series (2)
GSE84018 DNA methylation in CD34 positive cells derived from cord blood at birth following prenatal stress
GSE84028 Ankyrin-3 as a Molecular Marker of Early Life Stress and Vulnerability to Psychiatric Disorders

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ENSEMBL_ACC
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME Chromosome
RANGE_GB RefSeq accession.version
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)
SEQUENCE Probe sequence

Data table
ID COL ROW SPOT_ID CONTROL_TYPE ENSEMBL_ACC CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE
1 1 1 HsCGHBrightCorner pos
2 2 1 DarkCorner pos
3 3 1 DarkCorner pos
4 4 1 A_17_P32748077 FALSE ens|ENST00000218200:10116 chrX:147003585-147003641 chrX NC_000023.10 147003585 147003641 AAGTCCAGTTTGAGTGCTTTTCAGGAATGGATCTTCATGTTACTGACTGAGAAGTTT
5 5 1 A_17_P04553410 FALSE ens|ENST00000500636:41262 chr6:11214947-11214991 chr6 NC_000006.11 11214947 11214991 AGCCATTCCCGCATGTCTGCCCCCTTCCCAGAGCACAGCGAAGTC
6 6 1 A_17_P29794464 FALSE ens|ENST00000557544:1396 chr14:62161145-62161204 chr14 NC_000014.8 62161145 62161204 AGCTAGGTTTTAACAAGAAACTCATAAGGCAAAGGTGAGAAGTAAAATAATTTAGCGCCA
7 7 1 A_17_P02220527 FALSE ens|ENST00000383737:195855 chr3:47934914-47934968 chr3 NC_000003.11 47934914 47934968 ATCTTTCTCTGACCTCCAGACTTAGGGACTCTAACAATTGTAGCTTGGAGTTTTC
8 8 1 A_17_P08089862 FALSE ens|ENST00000525892:-1213 chr11:123966452-123966511 chr11 NC_000011.9 123966452 123966511 CACTTACATGGCAAACAGAGAACATAATTGGCTGTTACTTGTGAATGTTGTCTTCCTTTC
9 9 1 A_17_P04324739 FALSE ens|ENST00000504120:15926 chr5:140181802-140181861 chr5 NC_000005.9 140181802 140181861 TGTGGACATCAATGATAATGTACCTGAGTTAGTTATTCAATCACTATCTTTACCTGTATT
10 10 1 A_17_P00242499 FALSE ens|ENST00000371153:46733 chr1:62738352-62738396 chr1 NC_000001.10 62738352 62738396 CATAGTCAGACCCAACCTTAGAGCAAAGGCAAGAGTAGAGGTCCC
11 11 1 A_17_P20102327 FALSE ens|ENST00000400301:58158 chr1:22051530-22051589 chr1 NC_000001.10 22051530 22051589 TGTGACCAGTTTTATACTCCCCAGAGAGTTACATGTCTAGAAAACTAACTCCCATTTTAA
12 12 1 A_17_P06183850 FALSE ens|ENST00000522677:-651 chr8:67526135-67526194 chr8 NC_000008.10 67526135 67526194 AAACCAAATATCACCTGTTTTCCTCAAAAAGCAGCAGAAGAGTGACAAGTGAAAAAAGTT
13 13 1 A_17_P27158930 FALSE ens|ENST00000375643:48817 chr9:95007165-95007224 chr9 NC_000009.11 95007165 95007224 AAGGCACAGGCAAATACTTTCTCCTCTTATGCTCTCATCTCTTGGTAAAGAAATGTTCTA
14 14 1 A_17_P09576519 FALSE ens|ENST00000397702:-941 chr15:34631202-34631261 chr15 NC_000015.9 34631202 34631261 CCAATGTTTTGTTTGAAAAGCTATTTCCTATAGCTGTGATCAAGACCTCTAAATTTAACA
15 15 1 A_17_P24515848 FALSE ens|ENST00000343796:55581 chr5:142759496-142759555 chr5 NC_000005.9 142759496 142759555 GCAGTCAGCTCTAAACTGTTAATATGGAAGGATACTATTCTTCTTGGAAAGATACTGTTC
16 16 1 A_17_P07636972 FALSE ens|ENST00000547195:155 chr11:10715380-10715424 chr11 NC_000011.9 10715380 10715424 GATGGGTATCCACACAGCAGATGGCAGTCCCCATGGCAACTCGTG
17 17 1 A_17_P10317529 FALSE ens|ENST00000339569:16850 chr17:38295640-38295699 chr17 NC_000017.10 38295640 38295699 TGAAATAATTTCCATAAACCTTAAGAAGGAAATAATGTCAGGATTTTGAATCAACATCTG
18 18 1 A_17_P05773581 FALSE ens|ENST00000223073:-119 chr7:127984081-127984132 chr7 NC_000007.13 127984081 127984132 CCTAGCATCGCCCTCGCCACTTTTGTGTAAACTTGGCATCAATAATTTCTAC
19 19 1 A_17_P30866133 FALSE ens|ENST00000345365:-178 chr17:33447066-33447110 chr17 NC_000017.10 33447066 33447110 CTTCTAAAGAGCCTTCTGTGCGCCAGCTTCCGTTCCAAACGGAAC
20 20 1 A_17_P08585061 FALSE ens|ENST00000299767:27343 chr12:104351455-104351514 chr12 NC_000012.11 104351455 104351514 TGAAATCGACATAACTTAATCCAGGAATTTTTCCATTGTTTTGATTATTGGTTGTTTTTT

Total number of rows: 420288

Table truncated, full table size 70600 Kbytes.




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Supplementary file Size Download File type/resource
GPL22110_024757_D_GEO_20160701.txt.gz 19.6 Mb (ftp)(http) TXT

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