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Platform GPL22595 Query DataSets for GPL22595
Status Public on Oct 22, 2016
Title NimbleGen Ustilago maydis array [080805_UM_SG_EXP]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Ustilago maydis
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description DESIGN_ID: 8036
DESIGN_NAME: 080805_UM_SG_EXP
 
Submission date Oct 21, 2016
Last update date Oct 22, 2016
Contact name Claudia Geraldine Leon-Ramirez
E-mail(s) cleon@ira.cinvestav.mx
Phone +52 014626239600
Organization name Cinvestav Unidad Irapuato
Department Ingeniería Genética
Lab Diferenciación de Hongos
Street address Km. 9.6 Lib. Nte Carretera Irapuato-León
City Irapuato
State/province Guanajuato
ZIP/Postal code 36821
Country Mexico
 
Samples (3) GSM2357594, GSM2357595, GSM2357596
Series (1)
GSE89025 Transcriptomic analysis of basidiocarp development in Ustilago maydis (DC) Dcd

Data table header descriptions
ID NimbleGen sequence identifier (SEQ_ID)
SEQ_UNIQUE
ORF
GB_ACC GenBank Accession number
DESCRIPTION Genome localization an strand. Description of the gene, identifiers, putative function
SOURCE_DB
SPOT_ID

Data table
ID SEQ_UNIQUE ORF GB_ACC DESCRIPTION SOURCE_DB SPOT_ID
um00001 1 um00001 (1453-2481 (W)) - putative protein Umaydis_valid_orf_nuc_230107
um00002 2 um00002 ( 4429-2777 (C)) - related to AFG1 - ATPase family gene Umaydis_valid_orf_nuc_230107
um00003 3 um00003 (5192-7147 (W)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00005 5 um00005 ( 12488-12242,12138-10781 (C)) - probable Benzoate 4-monooxygenase cytochrome P450 Umaydis_valid_orf_nuc_230107
um00006 6 um00006 ( 16138-13829 (C)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00007 7 um00007 (17091-17945 (W)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00008 8 um00008 ( 19323-18157 (C)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00009 9 um00009 ( 20597-20315,20202-19892 (C)) - related to TMA20 - Protein putative involved in cytoplasmic ribosome function Umaydis_valid_orf_nuc_230107
um00011 11 um00011 (24072-25757 (W)) - probable AMD2 - amidase Umaydis_valid_orf_nuc_230107
um00012 12 um00012 ( 26503-25874 (C)) - related to ZIM17 - Zinc finger Motif protein, mitochondrial Umaydis_valid_orf_nuc_230107
um00013 13 um00013 ( 27833-26949 (C)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00014 3017 um00014 (52-55,209-1278 (W)) - related to 4-coumarate--CoA ligase 1 (C-terminal fragment) Umaydis_valid_orf_nuc_230107
um00017 3019 um00017 (4483-5373 (W)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00020 3023 um00020 (12364-13206 (W)) - related to l-azetidine-2-carboxylic acid acetyltransferase Umaydis_valid_orf_nuc_230107
um00025 3031 um00025 ( 28559-27150 (C)) - related to dehydroshikimate dehydratase Umaydis_valid_orf_nuc_230107
um00026 3032 um00026 (31414-32541 (W)) - related to FK506-binding protein (FKBP) Umaydis_valid_orf_nuc_230107
um00027 3033 um00027 (33267-33462,33553-34106 (W)) - putative protein Umaydis_valid_orf_nuc_230107
um00028 3034 um00028 (35600-35828,35932-35956,36051-36206,36291-36450 (W)) - conserved hypothetical protein Umaydis_valid_orf_nuc_230107
um00029 3035 um00029 ( 37723-36725 (C)) - probable myo-inositol oxygenase Umaydis_valid_orf_nuc_230107
um00030 3036 um00030 ( 41001-38983 (C)) - related to Proline oxidase, mitochondrial precursor Umaydis_valid_orf_nuc_230107

Total number of rows: 6893

Table truncated, full table size 793 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL22595_080805_UM_SG_EXP.ndf.gz 4.1 Mb (ftp)(http) NDF
GPL22595_080805_UM_SG_EXP.ngd.gz 205.8 Kb (ftp)(http) NGD

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