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Status
Public on Oct 25, 2016
Title
[AraGene-1_1-st] Arabidopsis Gene 1.1 ST Array [CDF: aragene11st_At_TAIRG version 19]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Affymetrix
Manufacture protocol
Affymetrix protocol
Description
This is identical to GPL17133 but a custom cdf environment was used to extract data.http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp
Submission date
Oct 24, 2016
Last update date
Oct 25, 2016
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (45)
GSM2358788 , GSM2358789 , GSM2358790 , GSM2358791 , GSM2358792 , GSM2358793
GSM2358794 ,
GSM2358795 ,
GSM2358796 ,
GSM2358797 ,
GSM2358798 ,
GSM2358799 ,
GSM2358800 ,
GSM2358801 ,
GSM2358802 ,
GSM2358803 ,
GSM2358804 ,
GSM2358805 ,
GSM2358806 ,
GSM2358807 ,
GSM2358808 ,
GSM2358809 ,
GSM2358810 ,
GSM2358811 ,
GSM2358812 ,
GSM2358813 ,
GSM2358814 ,
GSM2358815 ,
GSM2358816 ,
GSM2358817 ,
GSM2358818 ,
GSM2358819 ,
GSM2358820 ,
GSM2358821 ,
GSM2358822 ,
GSM2358823 ,
GSM2358824 ,
GSM2358825 ,
GSM5059742 ,
GSM5059743 ,
GSM5059744 ,
GSM5059745 ,
GSM5059746 ,
GSM5059747 ,
GSM5059748 Series (3)
GSE89100 Cell type-specific expression atlas of the early Arabidopsis thaliana embryo
GSE89101 Nuclear and cellular expression data from the whole 16-cell stage Arabidopsis thaliana embryo and a cell type-specific expression atlas of the early Arabidopsis embryo
GSE165986 A molecular framework for control of oriented cell division in the Arabidopsis embryo
Relations Alternative to
GPL17133 (alternative CDF [official])
Data table header descriptions ID Probe Set Name
Description ORF ORF Name
Data table ID Description ORF AT1G01010_at
ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688
AT1G01010 AT1G01020_at
ARV1 | Arv1-like protein | chr1:5928-8737 REVERSE LENGTH=1623
AT1G01020 AT1G01030_at
NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905
AT1G01030 AT1G01040_at
DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23146-31227 FORWARD LENGTH=6251
AT1G01040 AT1G01046_at
MIR838A | MIR838a; miRNA | chr1:28500-28706 FORWARD LENGTH=207
AT1G01046 AT1G01050_at
AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976
AT1G01050 AT1G01060_at
LHY | Homeodomain-like superfamily protein | chr1:33967-37871 REVERSE LENGTH=2722
AT1G01060 AT1G01070_at
| nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40927 REVERSE LENGTH=1433
AT1G01070 AT1G01073_at
| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). | chr1:44677-44787 FORWARD LENGTH=111
AT1G01073 AT1G01080_at
| RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319
AT1G01080 AT1G01090_at
PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
AT1G01090 AT1G01100_at
| 60S acidic ribosomal protein family | chr1:50075-51199 REVERSE LENGTH=631
AT1G01100 AT1G01110_at
IQD18 | IQ-domain 18 | chr1:52239-54692 FORWARD LENGTH=1782
AT1G01110 AT1G01115_at
| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). | chr1:56624-56740 FORWARD LENGTH=117
AT1G01115 AT1G01120_at
KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899
AT1G01120 AT1G01130_at
| CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375
AT1G01130 AT1G01140_at
CIPK9, PKS6 | CBL-interacting protein kinase 9 | chr1:64167-67625 REVERSE LENGTH=1694
AT1G01140 AT1G01150_at
| Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178
AT1G01150 AT1G01160_at
GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045
AT1G01160 AT1G01170_at
| Protein of unknown function (DUF1138) | chr1:73931-74731 REVERSE LENGTH=503
AT1G01170
27826 4069 Kbytes .Supplementary file Size Download File type/resource GPL22599_aragene11st_At_TAIRG.cdf.gz
9.3 Mb
(ftp) (http) CDF
GPL22599_aragene11st_At_TAIRG.cdf.txt.gz
3.6 Mb
(ftp) (http) TXT
GPL22599_aragene11st_At_TAIRG_desc.txt.gz
888.2 Kb
(ftp) (http) TXT
GPL22599_aragene11st_At_TAIRG_mapping.txt.gz
4.4 Mb
(ftp) (http) TXT
GPL22599_aragene11st_At_TAIRG_probe_tab.txt.gz
8.2 Mb
(ftp) (http) TXT
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