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| Status |
Public on Nov 03, 2016 |
| Title |
Streptococcus pneumoniae D39 Agilent-065256 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Streptococcus pneumoniae D39 |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's website
|
| |
|
| Description |
Streptococcus pneumoniae D39
Including rRNA and tRNA
|
| |
|
| Submission date |
Nov 02, 2016 |
| Last update date |
Nov 03, 2016 |
| Contact name |
Sulman Shafeeq |
| E-mail(s) |
salmansha@gmail.com
|
| Organization name |
Karolinska Institutet
|
| Department |
MTC
|
| Street address |
nobel vag 16
|
| City |
STOCKHOLM |
| ZIP/Postal code |
17177 |
| Country |
Sweden |
| |
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| Samples (41)
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GSM2372597, GSM2372598, GSM2372599, GSM2372600, GSM2372601, GSM2372602
GSM2384976, GSM2384977, GSM2477244, GSM2477245, GSM2477252, GSM2477253, GSM2478461, GSM2478462, GSM2478463, GSM2478464, GSM3034245, GSM3034246, GSM3034247, GSM3034248, GSM3034249, GSM3066147, GSM3066148, GSM3066149, GSM3066150, GSM3066151, GSM3066152, GSM3066153, GSM3066154, GSM4681850, GSM4681851, GSM4681852, GSM4681853, GSM4681854, GSM4681855, GSM4681856, GSM4681857, GSM4681858, GSM4681859, GSM4681860, GSM4681861
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| Series (16)
|
| GSE86008 |
N-acetylgalactosamine Mediated Regulation of the aga Operon by AgaR in Streptococcus pneumoniae |
| GSE89458 |
Transcriptome response of the Streptococcus pneumoniae D39 wild-type to cysteine |
| GSE89590 |
Impact of ccpA delation on the transcriptome of Streptococcus pneumoniae D39 in the presece of N-acetylglucosamine (NAG) |
| GSE94511 |
Impact of naiR delation on the transcriptome of Streptococcus pneumoniae D39 |
| GSE94513 |
Transcriptome response of the Streptococcus pneumoniae D39 wild-type to Naicin |
| GSE94571 |
Impact of rex delation on the transcriptome of Streptococcus pneumoniae D39 |
| GSE94572 |
Transcriptome response of the Streptococcus pneumoniae D39 wild-type to NADH |
| GSE94573 |
Impact of NADH on gene expression of Streptococcus pneumoniae and role of Rex as a transcriptional repressor of the Rex regulon |
| GSE111562 |
The response of Streptococcus pneumoniae to antibiotic stress on the transcriptome of a competence negative strain |
| GSE112283 |
Transcriptome comparison of the Streptococcus pneumoniae D39 ∆rgg144to D39 wild type grown in galactose |
| GSE112284 |
Transcriptome comparison of the Streptococcus pneumoniae D39 ∆rgg144to D39 wild type grown in Mannose |
| GSE112285 |
Transcriptome comparison of the Streptococcus pneumoniae D39 ∆rgg939 to D39 wild type grown in galactose |
| GSE112286 |
Transcriptome comparison of the Streptococcus pneumoniae D39 ∆rgg939 to D39 wild type grown in Mannose |
| GSE112288 |
Rgg-Shp regulators are important for pneumococcal colonization and invasion through their effect on mannose utilization and capsule synthesis |
| GSE154887 |
Investigating the role of Rgg1518 transcriptional regulator in Streptococcus pneumoniae biology |
| GSE154888 |
Glutamate dehydrogenase (GdhA) of S. pneumoniae is required for high temperature adaptation |
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| Data table header descriptions |
| ID |
|
| ORF |
Locus tag |
| Gene |
Gene name |
| Protein_ID |
protein name |
| Gene_ID |
Gene number |
| Protein_name |
gene function |
| Data table |
| ID |
ORF |
Gene |
Protein_ID |
Gene_ID |
Protein_name |
| SPD_0001 |
SPD_0001 |
dnaA |
YP_815417.1 |
4442762 |
dnaA gene product |
| SPD_0002 |
SPD_0002 |
dnaN |
YP_815419.1 |
4442015 |
dnaN gene product |
| SPD_0003 |
SPD_0003 |
SPD_0003 |
YP_815421.1 |
4441542 |
unnamed protein product |
| SPD_0004 |
SPD_0004 |
ychF |
YP_815423.1 |
4442821 |
ychF gene product |
| SPD_0005 |
SPD_0005 |
pth |
YP_815426.1 |
4441019 |
pth gene product |
| SPD_0006 |
SPD_0006 |
mfd |
YP_815427.1 |
4442513 |
mfd gene product |
| SPD_0007 |
SPD_0007 |
SPD_0007 |
YP_815429.1 |
4442715 |
unnamed protein product |
| SPD_0008 |
SPD_0008 |
SPD_0008 |
YP_815431.1 |
4442430 |
unnamed protein product |
| SPD_0009 |
SPD_0009 |
SPD_0009 |
YP_815432.1 |
4442160 |
unnamed protein product |
| SPD_0010 |
SPD_0010 |
SPD_0010 |
YP_815433.1 |
4441394 |
unnamed protein product |
| SPD_0011 |
SPD_0011 |
tilS |
YP_815434.1 |
4442234 |
tilS gene product |
| SPD_0012 |
SPD_0012 |
hpt |
YP_815435.1 |
4441355 |
hpt gene product |
| SPD_0013 |
SPD_0013 |
ftsH |
YP_815436.1 |
4441207 |
ftsH gene product |
| SPD_0014 |
SPD_0014 |
comX1 |
YP_815437.1 |
4441078 |
comX1 gene product |
| SPD_0015 |
SPD_0015 |
SPD_0015 |
|
4441726 |
|
| SPD_0016 |
SPD_0016 |
rrsA |
|
4441719 |
|
| SPD_0017 |
SPD_0017 |
SPD_0017 |
|
4441798 |
|
| SPD_0018 |
SPD_0018 |
rrlA |
|
4441707 |
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| SPD_0019 |
SPD_0019 |
rrfA |
|
4441718 |
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| SPD_0020 |
SPD_0020 |
SPD_0020 |
|
4441750 |
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Total number of rows: 2033
Table truncated, full table size 129 Kbytes.
| Supplementary data files not provided |
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