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Platform GPL22663 Query DataSets for GPL22663
Status Public on Oct 21, 2019
Title Agilent-026636 Lactobacillus plantarum Prueba Lp IFI 021109
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactiplantibacillus plantarum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Genoma Total Lp WCFS1

Arrays of this design have barcodes that begin with 16026636 or 2526636.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 12, 2016
Last update date Oct 21, 2019
Contact name Felix Lopez de Felipe
E-mail(s) fxlopez@ictan.csic.es
Organization name ICTAN-CSIC
Street address Jose Antonio Novais
City Madrid
ZIP/Postal code 28040
Country Spain
 
Samples (9) GSM2388846, GSM2388847, GSM2388848, GSM2411121, GSM2411122, GSM2411123 
Series (3)
GSE89785 Transcriptional profile Lactobacillus plantarum WCFS1 : Resveratrol treated cells
GSE90714 Transcriptional profile Lactobacillus plantarum WCFS1 : Hydroxytyrosol treated cells
GSE90719 Transcriptional profile Lactobacillus plantarum WCFS1 : Oleuropein treated cells

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 AG1lp_0272#3 AG1lp_0272#3 FALSE unmapped CCAAGCGGATTCAGCGTTATCTAGCTGGAAGCTGTACAATTACTGCGGGAATTCATGTCA
5 96 156 AG1lp_0081#1 AG1lp_0081#1 FALSE unmapped GAAGATTCTGACTTCATTAATCGGGCCCTTAAGAACACGCTCAAGCCTAGTCAGGTCGAT
6 96 154 AG1lp_2759#2 AG1lp_2759#2 FALSE unmapped TAACTTCTGAGAAGACGATTTCTCCGCGAACTGAAGCAGTTCTCAAACAGCTGCATTCGG
7 96 152 AG3lp_0670#3 AG3lp_0670#3 FALSE unmapped ACGGATATTGGTACAAGCTCCAAGATTGATAATGATAATTCCATTAAACCGCAATTTGGA
8 96 150 AG1lp_3271#2 AG1lp_3271#2 FALSE unmapped TTCCGAACAAGTGTGTCATTAATAGTCGTTCGGAAGCCGATACGACCGTAGAATTGGGTG
9 96 148 AG1lp_1763#2 AG1lp_1763#2 FALSE unmapped GAACGATGGTCAGCGGGTACGCATAAGATTCGCTTGGTTGACATAAAAGATTGGCTACAA
10 96 146 AG3lp_2011#1 AG3lp_2011#1 FALSE unmapped GGTCGATAACCGAGGACATCGTAAACCCGAATCAGAATTAACCGATTTGGACAAAGCCAA
11 96 144 AG1lp_1102#1 AG1lp_1102#1 FALSE unmapped TTGGTGGGCCTGATCATTTGGTTAAGTAGTCCTATCAAACCAGCCAGTGTTTCGATGAAC
12 96 142 AG1lp_1296#3 AG1lp_1296#3 FALSE unmapped AAGTTGAAGCAACTGGATTACCACACACCTTTATCGACAGTTTCTACGACCAACCGACCT
13 96 140 AG1lp_3133#3 AG1lp_3133#3 FALSE unmapped GGAAGAATGATGAGGAGATTAGTTCTGCAAGCGATACTGGCGAAGCAACGACAACTGTAG
14 96 138 AG3lp_3479#2 AG3lp_3479#2 FALSE unmapped AAAGGCGCTAATGCGGAAAAATATCGCTGTGATTCAGTGGTACTCTAAGATTCAAGAACA
15 96 136 AG1lp_2630#1 AG1lp_2630#1 FALSE unmapped TACTGGAACGCGGCTGTCTAATGTTACTGTCAGAACCACTACTTTTAGGCGATTTAGGCT
16 96 134 AG1lp_0706#2 AG1lp_0706#2 FALSE unmapped GTGGATAAGCGTGATTTATACGATAGTTTCGGTGAGATGGAACAACAGATGCAACAAATG
17 96 132 AG3lp_3110#1 AG3lp_3110#1 FALSE unmapped AATGCGGACGATCGTCAAGGATTGGCTTTAAATCCGGAAGATATTGCTAACGCGGTATTA
18 96 130 AG1lp_1539#3 AG1lp_1539#3 FALSE unmapped CACCCAACAGTCGACGCAAAATAAGGCGACAAGCCAATCAACTAGCAGCCAAAGTAATTC
19 96 128 AG1lp_2453#2 AG1lp_2453#2 FALSE unmapped CCGTCCTCTTCCCCGTCCAGCCCTCCCACTCATAAACAAAAATGGTTATCAGACTATTTC
20 96 126 AG1lp_1803#1 AG1lp_1803#1 FALSE unmapped CGCATCTGTTAGTGACCCAACGTCGTTTACGGCTTTTAATGATCTTTGACGCGCTCTTTT

Total number of rows: 15744

Table truncated, full table size 1707 Kbytes.




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Supplementary file Size Download File type/resource
GPL22663_026636_D_GEO_20091217_Platform_026636.txt.gz 492.8 Kb (ftp)(http) TXT

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