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Platform GPL22803 Query DataSets for GPL22803
Status Public on Dec 31, 2017
Title CSIR SA Sorghum 4x44K v1.0
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Sorghum bicolor
Manufacturer Agilent
Manufacture protocol In-situ oligonucleotide synthesis, standard Agilent protocol.
 
 
Submission date Dec 16, 2016
Last update date Dec 31, 2017
Contact name Dave Kenneth Berger
E-mail(s) dave.berger@up.ac.za
Phone +27124204634
Organization name University of Pretoria
Department Plant and Soil Science
Lab Molecular and Plant Pathogen Interactions
Street address Lynnwood Road
City Pretoria
State/province Gauteng
ZIP/Postal code 0002
Country South Africa
 
Samples (27) GSM2430582, GSM2430583, GSM2430584, GSM2430585, GSM2430586, GSM2430587 
Series (1)
GSE92487 Transcriptomic analysis of three Sorghum bicolor landraces following progressive water stress and re-watering

Data table header descriptions
ID Reference number for each S. bicolor probe on the array. Some probes are duplicated on the array, while others are not.
COLUMN Column coordinate for each spot in the array
ROW Row coordinate for each spot in the array
IDREF ID of each spot
PROBE_NAME A generic probe name for each spot based on the design of the array from the draft S. bicolor genome.
SEQUENCE 60-mer sequence of each probe on the array
SPOT_ID Identifier for each probe based on gene-predictor output or genbank accession.

Data table
ID COLUMN ROW IDREF PROBE_NAME SEQUENCE SPOT_ID
45125 1 22 GT_Sb_As_Xhyb_0001316 Sorbi1_5272649 AAACCAGTCTTCTTACTGCAGTGTGTGACCTTGAACAAATCAATAGCAGTGGGCTCTGTA Sb07g012421
45209 1 23 GT_Sb_As_Specific_0096542 Sorbi1_5010577 AGGTCCGAGTAGAGAGTGACGTTACTGCTTCTGCTGGGGCAGTCCGAACTAGGCACGGGG e_gw1.1.4154.1
45124 1 24 GT_Sb_As_Specific_0038913 Sorbi1_5263665 AATGACGGTGAACAGCGCATCCACCCGAGCCTTCAACTCCTCGTACTCCTGGCGGACGTG Sb02g036020
45208 1 25 GT_Sb_As_Specific_0020257 Sorbi1_5283350 AACTTTGATGAACTTCTCCTTGTAACTCTGCAGCCCAGGAATCCCAGGAGGAAATGTTAG Sb03g042330
45123 1 26 GT_Sb_As_Specific_0001757 Sorbi1_4999896 AAACCTTTTGCTCAATAAAACCATGAAACTAACATCCTCTGTCTCACACCGGCATTATCT estExt_Genewise1.C_chr_106021
45207 1 27 GT_Sb_As_Specific_0002211 Sorbi1_148362 AAACTAATAAAGAACCCAGCACATCTCTACACCTTCTGATCCGACACTGATGACAGAAAC estExt_fgenesh1_kg.C_chr_30351
45122 1 28 GT_Sb_As_Specific_0104160 Sorbi1_5290534 AGTTCCCACGTAGTCATGCCTCTTGAGGAAAATGAAGCTATATGGTTATTGTAATCAATA Sb10g004450
45206 1 29 GT_Sb_As_Specific_0009915 Sorbi1_5124102 AAATTGTCCAACACTACGAACAGAGCTGAATCCAACAACCTAAAAGTACAGGCAGACGAA estExt_Genewise1Plus.C_chr_96259
45121 1 30 GT_Sb_As_Specific_0019303 Sorbi1_5283427 AACTGTGATACAACACGGACAATGACATCTCCTCCCATGGTCGCAAAGAACGGATTCTTA Sb03g043540
45205 1 31 GT_Sb_As_Specific_0137801 Sorbi1_126614 ATGGTGGAGAAGTTGTGCAGCGAGGACGATGTGACCGACGACGAGGAGCCTTCGTCCTGG fgenesh1_pm.C_chr_3001645
45120 1 32 GT_Sb_As_Specific_0057425 Sorbi1_5228327 ACCCAAAGGTTCACAAAAATCATGGCTGATTAGGTCAGATGAGGCATCAAAATCGTCCTC estExt_fgenesh1_pg.C_chr_20045
45204 1 33 GT_Sb_As_Specific_0014371 Sorbi1_5201923 AACCAAGCAGGTAAGCTTGCCAGTTTTCCCCTATCAAAATCAGAGGGTTCAAACCGTTTG fgenesh1_pg.C_chr_2004052
45119 1 34 GT_Sb_As_Xhyb_0186210 Sorbi1_5034367 CCACATTCATCTCATGAATGGCACTAACATACCTCACCGTAGTGTCCAAAGTAGGATCAC e_gw1.3.11865.1
45203 1 35 GT_Sb_As_Specific_0034350 Sorbi1_5074097 AATAGTTAAGTGCCTCAACAAACCGGTCGGAGAACAACAAGGCGTTGTGGTTTGCATCTT e_gw1.8.144.1
45118 1 36 GT_Sb_As_Specific_0000935 Sorbi1_5286342 AAACATCAGTTACACAACACCTTGAACATACAGGTCACGAATCCATGGCACACGGAGATG Sb06g015330
45202 1 37 GT_Sb_As_Specific_0010074 Sorbi1_5207525 AAATTTCCTGCTGCAATGCTTGTGTTTGGCCTACAACATCGTCCATGTACACCTTCGATG fgenesh1_pg.C_chr_4001171
45117 1 38 GT_Sb_As_Specific_0116631 Sorbi1_5091524 ATCAAAATCAAAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGC e_gw1.10.15672.1
45201 1 39 GT_Sb_As_Xhyb_0087103 Sorbi1_5261230 AGCCGGAGCGGCCCGGCGCGGCTGGCACGGCTCCGAGCTCCACGACGGCTCGGCTGGCCG Sb10g026040
45116 1 40 GT_Sb_As_Specific_0017658 Sorbi1_5194791 AACTAGACACATGTTGACATGCAGCCTGCTGATTGGTAAATTCATCAACGACCTCAGGTG fgenesh1_pg.C_chr_1002206
45200 1 41 GT_Sb_As_Specific_0202423 Sorbi1_5265065 CCTTGACATAATAAGTGGCCTCCATTTCCTGTAGACATGGGAGTATTCTTCGCAGCTGTA Sb03g019530

Total number of rows: 43803

Table truncated, full table size 5792 Kbytes.




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