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Platform GPL23283 Query DataSets for GPL23283
Status Public on Feb 01, 2018
Title Agilent-029634 Brassica napus 60K v1.0 FUB (Feature ID)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Brassica napus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Brassica Napus 8x60 Kunze
Arrays of this design have barcodes that begin with 16029634 or 2529634.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 11, 2017
Last update date Feb 01, 2018
Contact name Reinhard Kunze
E-mail(s) reinhard.kunze@fu-berlin.de
Phone +49 30 838 55802
Organization name Freie Universität Berlin
Department Institute of Biology
Lab Plant Molecular Genetics
Street address Albrecht-Thaer-Weg 6
City Berlin
State/province Berlin
ZIP/Postal code 14195
Country Germany
 
Samples (36) GSM2574395, GSM2574396, GSM2574397, GSM2574398, GSM2574399, GSM2574400 
Series (1)
GSE97653 Divergent N-deficiency-dependent senescence initiation and transcriptome response in developmentally old and young Brassica napus leaves
Relations
Alternative to GPL19044 (alternative)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 BrsNa0226279 BrsNa0226279 FALSE unmapped TTCGTGGAAGTGCGTTAATGGTGGTGATCGCAGAGACGATTTTGATCTTGGCTTTGAGTT
5 192 320 BrsNa0215551 BrsNa0215551 FALSE unmapped ATGTCTCTCCGTCGTCAAAGCACCACCGTACAGGGAGCCATCTACGCGTCTCCACCACCT
6 192 318 BrsNa0742062 BrsNa0742062 FALSE unmapped GAACCCAACATTTTTGTACTTCGGACATGGTTTGAAGGAGGGCAAGTGCTGAGTGAAGAA
7 192 316 BrsNa0059135 BrsNa0059135 FALSE unmapped AGGCTCTGGAGACAAAGAACAGCAGTTTCATCTATGGTTCGACCCAACAAAGAACTTTCA
8 192 314 BrsNa0591658 BrsNa0591658 FALSE unmapped CCGAAAAGAGCAGTGTGAGAGTTGGGCAGTTCAATAAAGGTGCTCCAGTTGAAGAAAAAA
9 192 312 BrsNa0288494 BrsNa0288494 FALSE unmapped ACGTGATCGCGAATCTCCAGCAGCAGAATCTGAGGATCTTGTTTGATGTTCCTAATTCTC
10 192 310 BrsNa0358472 BrsNa0358472 FALSE unmapped GGTGGAGATGATCCACACGATGTCGCTGATCCACGACGATCTCCCGTGTATGGACAACGA
11 192 308 BrsNa0764404 BrsNa0764404 FALSE unmapped TGCTGAAGAGAAAGGAGTGCCTGATTTCTGGCTTATTGCATTAAAGAACAATGAAATTAC
12 192 306 BrsNa0307321 BrsNa0307321 FALSE unmapped CACAACCTAAGCTCTTCTTGGGGTCTAACCTTCACAGTGACATCACCAACAAACACCTAA
13 192 304 BrsNa0682822 BrsNa0682822 FALSE unmapped GAGTTAAAGAATGTCGAGCTCTGGGGATTTGCACATGCGTCTCAATACCTCTTCTCATGA
14 192 302 BrsNa0491954 BrsNa0491954 FALSE unmapped AGTAGACACACAACTGTTTAGCGTTCTATCAGACTCACGGCTATCGAGCTTTGAGAACGA
15 192 300 BrsNa0035984 BrsNa0035984 FALSE unmapped GCTTCTAGATATTTTCATAACCTCTTCAGACCGGAGATTCACCACCAACAACAGCTTCAA
16 192 298 BrsNa0466622 BrsNa0466622 FALSE unmapped TTAACTTCCCTCAACAGTGTGTTGTTGCCTCTGAGTTCTTGGCTAGTACATCGAGTCAGT
17 192 296 BrsNa0202043 BrsNa0202043 FALSE unmapped TTGCCATGCTGTTCACTGACTCACAAAACATCAAGGAGGTTATTCTCTTCCCGGCAATGA
18 192 294 BrsNa0088912 BrsNa0088912 FALSE unmapped GAGAAGAGACCAAAAACGAGGAGACATTGATTCAAACTTGCACGCCAACGCCGGAAAATT
19 192 292 BrsNa0012482 BrsNa0012482 FALSE unmapped AGATTGCCTGGACGAACCGACAACGAAGTAAGGATCCATTGGGAAACTTACTTAGAGAAG
20 192 290 BrsNa0146325 BrsNa0146325 FALSE unmapped AGATGAGTCCAGGAACTCGACTTCAGATTCTTCTTTAATTGAAAACATCTCAGGCTCGAA

Total number of rows: 62976

Table truncated, full table size 7654 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL23283_029634_D_GEO_20100801.txt.gz 2.0 Mb (ftp)(http) TXT

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