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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 30, 2018 |
| Title |
GeoChip 4.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organisms |
Bacteria; Archaea; Eukaryota; Viruses |
| Manufacturer |
Customed Nimbergen microarray |
| Manufacture protocol |
http://ieg.ou.edu/protocol.htm
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| Submission date |
May 03, 2017 |
| Last update date |
Feb 26, 2018 |
| Contact name |
Qun Gao |
| E-mail(s) |
gao-q14@mails.tsinghua.edu.cn
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| Organization name |
Tsinghua University
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| Department |
Environmental sicence and engineering
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| Street address |
Shuang Qing Road
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| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100084 |
| Country |
China |
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| Samples (296)
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GSM2597781, GSM2597782, GSM2597783, GSM2597784, GSM2597785, GSM2597786
GSM2597787, GSM2597788, GSM2597789, GSM2597790, GSM2597791, GSM2597792, GSM2597793, GSM2597794, GSM2597795, GSM2597796, GSM2597797, GSM2597798, GSM2597799, GSM2597800, GSM2597801, GSM2597802, GSM2597803, GSM2597804, GSM2597805, GSM2597806, GSM2597807, GSM2597808, GSM2597809, GSM2597810, GSM2597811, GSM2597812, GSM2597813, GSM2597814, GSM2597815, GSM2597816, GSM2597817, GSM2597818, GSM2597819, GSM2597820, GSM2597821, GSM2597822, GSM2597823, GSM2597824, GSM2597825, GSM2597826, GSM2597827, GSM2597828, GSM2597829, GSM2597830, GSM2597831, GSM2597832, GSM2597833, GSM2597834, GSM2597835, GSM2597836, GSM2597837, GSM2597838, GSM2597839, GSM2597840, GSM2597841, GSM2597842, GSM2597843, GSM2597844, GSM2597845, GSM2597846, GSM2597847, GSM2597848, GSM2597849, GSM2597850, GSM2597851, GSM2597852, GSM2597853, GSM2597854, GSM2597855, GSM2597856, GSM2597857, GSM2597858, GSM2597859, GSM2597860, GSM2597861, GSM2597862, GSM2597863, GSM2597864, GSM2597865, GSM2597866, GSM2597867, GSM2597868, GSM2597869, GSM2597870, GSM2597871, GSM2597872, GSM2597873, GSM2597874, GSM2597875, GSM2597876, GSM2597877, GSM2597878, GSM2597879, GSM2597880, GSM2597881, GSM2597882, GSM2597883, GSM2597884, GSM2597885, GSM2597886, GSM2597887, GSM2597888, GSM2597889, GSM2597890, GSM2597891, GSM2597892, GSM2597893, GSM2597894, GSM2597895, GSM2597896, GSM2597897, GSM2597898, GSM2597899, GSM2597900, GSM2597901, GSM2597902, GSM2597903, GSM2597904, GSM2597905, GSM2597906, GSM2597907, GSM2597908, GSM2597909, GSM2597910, GSM2597911, GSM2597912, GSM2597913, GSM2597914, GSM2597915, GSM2597916, GSM2597917, GSM2597918, GSM2597919, GSM2597920, GSM2597921, GSM2597922, GSM2597923, GSM2597924, GSM2597925, GSM2597926, GSM2597927, GSM2597928, GSM2597929, GSM2597930, GSM2597931, GSM2597932, GSM2597933, GSM2597934, GSM2597935, GSM2597936, GSM2597937, GSM2597938, GSM2597939, GSM2597940, GSM2597941, GSM2597942, GSM2597943, GSM2597944, GSM2597945, GSM2597946, GSM2597947, GSM2597948, GSM2597949, GSM2597950, GSM2597951, GSM2597952, GSM2597953, GSM2597954, GSM2597955, GSM2597956, GSM2597957, GSM2597958, GSM2597959, GSM2597960, GSM2597961, GSM2597962, GSM2597963, GSM2597964, GSM2597965, GSM2597966, GSM2597967, GSM2597968, GSM2597969, GSM2597970, GSM2597971, GSM2597972, GSM2597973, GSM2597974, GSM2597975, GSM2597976, GSM2597977, GSM2597978, GSM2597979, GSM2597980, GSM2597981, GSM2597982, GSM2597983, GSM2597984, GSM2597985, GSM2597986, GSM2597987, GSM2597988, GSM2597989, GSM2597990, GSM2597991, GSM2597992, GSM2597993, GSM2597994, GSM2597995, GSM2597996, GSM2597997, GSM2597998, GSM2597999, GSM2598000, GSM2598001, GSM2598002, GSM2598003, GSM2598004, GSM2598005, GSM2598006, GSM2598007, GSM2598008, GSM2598009, GSM2598010, GSM2598011, GSM2598012, GSM2598013, GSM2598014, GSM2598015, GSM2598016, GSM2598017, GSM2598018, GSM2598019, GSM2598020, GSM2598021, GSM2598022, GSM2598023, GSM2598024, GSM2598025, GSM2598026, GSM2598027, GSM2598028, GSM2598029, GSM2598030, GSM2598031, GSM2598032, GSM2598033, GSM2598034, GSM2598035, GSM2598036, GSM2598037, GSM2598038, GSM2598039, GSM2598040, GSM2598041, GSM2598042, GSM2598043, GSM2598044, GSM2598045, GSM2598046, GSM2598047, GSM2598048, GSM2598049, GSM2598050, GSM2598051, GSM2598052, GSM2598053, GSM2598054, GSM2598055, GSM2598056, GSM2598057, GSM2598058, GSM2598059, GSM2598060, GSM2598061, GSM2598062, GSM2598063, GSM2598064, GSM2598065, GSM2598066, GSM2598067, GSM2598068, GSM2598069, GSM2598070, GSM2598071, GSM2598072, GSM2598073, GSM2598074, GSM2598075, GSM2598076
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| Series (1) |
| GSE98512 |
Antagonistic interactive effects of CO2 and nitrogen on microbial community enhance the persistence of soil C storage |
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| Data table header descriptions |
| ID |
GenBank accession number of gene |
| Gene name |
The name of gene detected |
| Gene category |
The categories according to gene functions |
| Sub-category1 |
coarse division of gene categories |
| Sub-category2 |
fine division of gene categories |
| Lineage |
The phylogenetic information of organism |
| SPOT_ID |
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| Data table |
| ID |
Gene name |
Gene category |
Sub-category1 |
Sub-category2 |
Lineage |
SPOT_ID |
| 67540332 |
mdlC |
Organic Remediation |
Aromatics |
Aromatic carboxylic acid |
superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; |
mdlC |
| 184198267 |
nmoA |
Organic Remediation |
Aromatics |
Nitoaromatics |
superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; |
nmoA |
| 255021255 |
MFS_antibiotic |
Antibiotic resistance |
transporter |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; |
MFS_antibiotic |
| 75992416 |
phtA |
Organic Remediation |
Aromatics |
Aromatic carboxylic acid |
superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; |
phtA |
| 142688 |
endochitinase |
Carbon cycling |
Carbon degradation |
Chitin |
superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; |
endochitinase |
| 84501125 |
pstB |
Stress |
Phosphate limitation |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; |
pstB |
| 227078500 |
sigma_24 |
Stress |
Sigma factors |
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superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; |
sigma_24 |
| 209497899 |
tfdA |
Organic Remediation |
Aromatics |
Chlorinated aromatics |
superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; |
tfdA |
| 160896251 |
pimF |
Organic Remediation |
Aromatics |
Aromatic carboxylic acid |
superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; |
pimF |
| 3021322 |
fnr |
Stress |
Oxygen stress |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; |
fnr |
| 88814759 |
SMR_antibiotics |
Antibiotic resistance |
transporter |
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superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; |
SMR_antibiotics |
| 154508996 |
obgE |
Stress |
Radiation stress |
|
superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; |
obgE |
| 27352759 |
nhh |
Organic Remediation |
Aromatics |
Nitoaromatics |
superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; |
nhh |
| 187719962 |
CopA |
Metal Resistance |
Copper |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; |
CopA |
| 77361354 |
sigma_24 |
Stress |
Sigma factors |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; |
sigma_24 |
| 229324112 |
pstB |
Stress |
Phosphate limitation |
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superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; |
pstB |
| 189425459 |
bco |
Organic Remediation |
Aromatics |
Aromatic carboxylic acid |
superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; |
bco |
| 239801383 |
sigma_38 |
Stress |
Sigma factors |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; |
sigma_38 |
| 77362680 |
Catechol |
Organic Remediation |
Aromatics |
Other aromatics |
superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; |
Catechol |
| 120599747 |
ArsC |
Metal Resistance |
Arsenic |
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superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; |
ArsC |
Total number of rows: 55646
Table truncated, full table size 10437 Kbytes.
| Supplementary data files not provided |
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