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Platform GPL23595 Query DataSets for GPL23595
Status Public on Mar 10, 2020
Title 081229_Dm_JM_ChIP_1_HX1 Drosophila melanogaster tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer NimbleGen
Manufacture protocol High-density DNA array made with with Maskless Array Synthesizer (MAS). See manufacturer's website at http://www.roche.com/.
 
Description Roche NimbleGen and J.R. Manak designed this array set constituted of two 2.1 million feature microarrays using Genome Release 5. It contains 50-mer oligonucleotide probes with a median probe spacing of 33 bp. Repeat rich sequences such as heterochromatin and transposons were included in the design. For this reason, up to close 100 matches per sequence were tolerated.
 
Submission date Jun 16, 2017
Last update date Mar 12, 2020
Contact name David H Price
E-mail(s) david-price@uiowa.edu
Organization name University of Iowa
Department Biochemistry and Molecular Biology
Lab 260 EMRB
Street address 500 Newton Road
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Samples (4) GSM2671883, GSM2671885, GSM2671887, GSM2671889
Series (2)
GSE100141 Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGen tiling array]
GSE100143 Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae.

Data table header descriptions
ID
SEQ_ID
CHROMOSOME
RANGE_START
COUNT_
LENGTH
GC

Data table
ID SEQ_ID CHROMOSOME RANGE_START COUNT_ LENGTH GC
CHR02LFS000000101 chr2L:1-23011544 chr2L 101 76 50 0.44
CHR02LFS000000161 chr2L:1-23011544 chr2L 161 75 50 0.30
CHR02LFS000000193 chr2L:1-23011544 chr2L 193 74 50 0.34
CHR02LFS000000299 chr2L:1-23011544 chr2L 299 74 50 0.48
CHR02LFS000000421 chr2L:1-23011544 chr2L 421 73 50 0.44
CHR02LFS000000447 chr2L:1-23011544 chr2L 447 74 50 0.44
CHR02LFS000000559 chr2L:1-23011544 chr2L 559 76 50 0.44
CHR02LFS000000619 chr2L:1-23011544 chr2L 619 75 50 0.30
CHR02LFS000000651 chr2L:1-23011544 chr2L 651 74 50 0.34
CHR02LFS000000757 chr2L:1-23011544 chr2L 757 74 50 0.48
CHR02LFS000000879 chr2L:1-23011544 chr2L 879 73 50 0.44
CHR02LFS000000905 chr2L:1-23011544 chr2L 905 74 50 0.44
CHR02LFS000001017 chr2L:1-23011544 chr2L 1017 76 50 0.44
CHR02LFS000001077 chr2L:1-23011544 chr2L 1077 75 50 0.30
CHR02LFS000001109 chr2L:1-23011544 chr2L 1109 74 50 0.34
CHR02LFS000001215 chr2L:1-23011544 chr2L 1215 74 50 0.48
CHR02LFS000001337 chr2L:1-23011544 chr2L 1337 73 50 0.44
CHR02LFS000001363 chr2L:1-23011544 chr2L 1363 74 50 0.44
CHR02LFS000001475 chr2L:1-23011544 chr2L 1475 76 50 0.44
CHR02LFS000001535 chr2L:1-23011544 chr2L 1535 75 50 0.30

Total number of rows: 2145036

Table truncated, full table size 125566 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL23595_081229_Dm_JM_ChIP_1_HX1.gff.gz 6.4 Mb (ftp)(http) GFF
GPL23595_081229_Dm_JM_ChIP_1_HX1.ncd.gz 256 b (ftp)(http) NCD
GPL23595_081229_Dm_JM_ChIP_1_HX1.ndf.gz 110.4 Mb (ftp)(http) NDF
GPL23595_081229_Dm_JM_ChIP_1_HX1.pos.gz 14.4 Mb (ftp)(http) POS

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