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Platform GPL23959 Query DataSets for GPL23959
Status Public on Aug 07, 2019
Title Agilent-045823 Mycobacterium tuberculosis [Feature Number]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycobacterium tuberculosis H37Ra
Manufacturer Agilent
Manufacture protocol see manufacturer's website
 
 
Submission date Aug 28, 2017
Last update date Aug 07, 2019
Contact name Hendrik Luesch
Organization name University of Florida
Department Medicinal Chemistry
Street address 1345 Center drive
City Gainesville
State/province Florida
ZIP/Postal code 32610
Country USA
 

Data table header descriptions
ID
Probe_name
SEQUENCE
SPOT_ID
GeneName
Description

Data table
ID Probe_name SEQUENCE SPOT_ID GeneName Description
1 GE_BrightCorner GE_BrightCorner
2 DarkCorner DarkCorner
3 DarkCorner DarkCorner
4 GT_Sp_MRA_2186_33751 CAAGCAGTGTTTTCCGATTTGACCTTTGCCGAGCTGCCCCAGTTGGCCAATATGAACTCC MRA_2186 lppM MRA_2186; Gene Symbol: lppM;Product: lipoprotein LppM; Gene present in in the region 2442853..2443536 in + of length 227; Next best Hit: MRA_1465(alignment length 13bp with 100.00%identity); Genes Covered: MRA_2186
5 GT_Sp_MRA_3216_39717 CAACTGGAAACGCTGGTACGACAACAACATTCCAATCGCTGACCAGCGCTCCGAGAACTG MRA_3216 MRA_3216;Product: hypothetical protein; Gene present in in the region 3562530..3562874 in + of length 114; COG: COG4683S; Next best Hit: MRA_1577(alignment length 15bp with 100.00%identity); Genes Covered: MRA_3216
6 GT_Sp_MRA_2562_34511 CTTCAGACCGGAGCCCAGATCAACGTGCCGCTGTTCATCAATACCGGAGACAAACTAAAG MRA_2562 efp MRA_2562; Gene Symbol: efp;Product: elongation factor P; Gene present in in the region 2870695..2871258 in - of length 187; COG: COG0231J; Next best Hit: MRA_1539(alignment length 14bp with 100.00%identity); Genes Covered: MRA_2562
7 GT_Sp_MRA_2089_11241 CACAACTCGTTCAACAGCCTCAGCGATTCGTTCACGGTCTCGCACGCAGACTCAAACCAG MRA_2089 MRA_2089;Product: hypothetical protein; Gene present in in the region 2341316..2342779 in - of length 487; Next best Hit: MRA_0120(alignment length 14bp with 100.00%identity); Genes Covered: MRA_2089
8 GT_Sp_MRA_2356_15601 ATGATCTCTTGCTGGTTCCCTCAATAGTCGAGCCATCGAATTTTCTCGAGAATATTTCCC MRA_2356 MRA_2356;Product: hypothetical protein; Gene present in in the region 2620741..2621709 in + of length 322; Next best Hit: MRA_0066(alignment length 13bp with 100.00%identity); Genes Covered: MRA_2356
9 GT_Sp_MRA_3202_11711 AACATCTTTCTGATCACCGGTATCGGCTACTACCCTAACCTGGGCGTGAAAGACGCGTTC MRA_3202 MRA_3202;Product: hypothetical protein; Gene present in in the region 3549394..3550518 in + of length 374; Next best Hit: MRA_3922(alignment length 14bp with 100.00%identity); Genes Covered: MRA_3202
10 GT_Sp_MRA_0376_40227 GTAGTTGGTTCGCGACAGGCGCTCCTCGATAGCTGCGGAGATCTCGGCGTTGAACACCAC MRA_0376 MRA_0376;Product: hypothetical protein; Gene present in in the region 446189..446617 in + of length 142; Next best Hit: MRA_2409(alignment length 13bp with 100.00%identity); Genes Covered: MRA_0376
11 GT_Sp_MRA_1456_81 AACCAGCTGTTCGACCCGATCTGGAATGCGCACTACGTCGACCACGTACAGATCACCATG MRA_1456 zwf2 MRA_1456; Gene Symbol: zwf2;Product: glucose-6-phosphate 1-dehydrogenase; Gene present in in the region 1626728..1628272 in - of length 514; COG: COG0364G; Next best Hit: MRA_1007(alignment length 14bp with 100.00%identity); Genes Covered: MRA_1456
12 GT_Sp_MRA_0502_37767 GACGAACTCACCGAATTACTCGGGGAGAAGGCCTATGGGGAACTCGCAGCAATGTGCAAG MRA_0502 MRA_0502;Product: hypothetical protein; Gene present in in the region 586734..587624 in - of length 296; Next best Hit: MRA_1947(alignment length 14bp with 100.00%identity); Genes Covered: MRA_0502
13 GT_Sp_MRA_2654_2661 ATCTACTACGTCGATGCGAACGCAAGCATCCAGGAGATGCTCAACGTCATGGAAGAACAT MRA_2654 MRA_2654;Product: hypothetical protein; Gene present in in the region 2964530..2964961 in - of length 143; COG: COG3620K; Next best Hit: MRA_0965(alignment length 18bp with 100.00%identity); Genes Covered: MRA_2654
14 GT_Sp_MRA_0926_39027 TTGAATTGTACGCCTATCAGGCACACAATTGATGTCATGGCTACCAAGCCTGAGCGGAAG MRA_0926 MRA_0926;Product: hypothetical protein; Gene present in in the region 1025519..1025995 in + of length 158; COG: COG4453S; Next best Hit: MRA_2731(alignment length 12bp with 100.00%identity); Genes Covered: MRA_0926
15 GT_Sp_MRA_3236_27141 TCGTTAATGGTTGGCTTTCATGCCTTGGGTGACCCGGATGAGGAGTTCTCGTTCAGCGAC MRA_3236 nudC MRA_3236; Gene Symbol: nudC;Product: NADH pyrophosphatase; Gene present in in the region 3582385..3583326 in - of length 313; COG: COG2816L; Next best Hit: MRA_1265(alignment length 13bp with 100.00%identity); Genes Covered: MRA_3236
16 GT_Sp_MRA_3184_26401 GTGCACCGACAGCTGAGGGTGACAATCGGCAGCATCGTGAAAATCGGAGCGGGCTCATGA MRA_3184 nuoG MRA_3184; Gene Symbol: nuoG;Product: NADH dehydrogenase subunit G; Gene present in in the region 3528902..3531322 in + of length 806; COG: COG1034C; Next best Hit: MRA_0845(alignment length 14bp with 100.00%identity); Genes Covered: MRA_3184
17 GT_Sp_MRA_3065_18481 CTGAATTGCGAAATGAAGATCAAGGACCGCACGTTCAACGTCAACGTCACCGTGACCAGT MRA_3065 MRA_3065;Product: hypothetical protein; Gene present in in the region 3405550..3406098 in + of length 182; Next best Hit: MRA_3303(alignment length 15bp with 100.00%identity); Genes Covered: MRA_3065
18 GT_Sp_MRA_1751_14841 GAATTGGCGGCTCGAATGGGCGAGACTTTGACACAAGCGGTCGTAGTTGCAGTGCGGGAG MRA_1751 MRA_1751;Product: hypothetical protein; Gene present in in the region 1969223..1969435 in + of length 70; COG: COG4423S; Next best Hit: MRA_0280(alignment length 12bp with 100.00%identity); Genes Covered: MRA_1751
19 GT_Sp_MRA_1543_1851 CTTGCGAGCGGGAATTACATTGCGACAAAGTGGTTCTCATCGAACTCGTTACGGTGATAA MRA_1543 MRA_1543;Product: hypothetical protein; Gene present in in the region 1733990..1734556 in + of length 188; COG: COG2128S; Next best Hit: MRA_1721(alignment length 13bp with 100.00%identity); Genes Covered: MRA_1543
20 GT_Sp_MRA_3082_36041 AAGATCTATCGGCATTTCACCGACAAGTCCGATTTGCTCGAGGCTATCGGGATGCGACTG MRA_3082 MRA_3082;Product: transcription regulator AsnC; Gene present in in the region 3423387..3424127 in - of length 246; COG: COG1309K; Next best Hit: MRA_1896(alignment length 13bp with 100.00%identity); Genes Covered: MRA_3082

Total number of rows: 15744

Table truncated, full table size 4803 Kbytes.




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Supplementary file Size Download File type/resource
GPL23959_Agilent-design.xlsx 910.2 Kb (ftp)(http) XLSX

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