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Status
Public on Dec 31, 2017
Title
Agilent custom HK design array [8mer]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
synthetic construct Manufacturer
Agilent Technologies
Manufacture protocol
This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.
Description
8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences.
Submission date
Oct 05, 2017
Last update date
Dec 31, 2017
Contact name
Desiree Tillo
E-mail(s)
desiree.tillo@nih.gov Phone
+1-240-760-7289
Organization name
NIH/NCI
Street address
41 Center Dr, Room D310
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (14)
GSM2804370 , GSM2804372 , GSM2804374 , GSM2804376 , GSM2804377 , GSM2804379
Series (1)
GSE104631 The REL domain of the NFATc2 protein binding to four types of DNA using protein binding microarrays
Data table header descriptions ID SEQUENCE
Data table ID SEQUENCE AAAAAAAA
AAAAAAAA
AAAAAAAC
AAAAAAAC
AAAAAAAG
AAAAAAAG
AAAAAAAT
AAAAAAAT
AAAAAACA
AAAAAACA
AAAAAACC
AAAAAACC
AAAAAACG
AAAAAACG
AAAAAACT
AAAAAACT
AAAAAAGA
AAAAAAGA
AAAAAAGC
AAAAAAGC
AAAAAAGG
AAAAAAGG
AAAAAAGT
AAAAAAGT
AAAAAATA
AAAAAATA
AAAAAATC
AAAAAATC
AAAAAATG
AAAAAATG
AAAAAATT
AAAAAATT
AAAAACAA
AAAAACAA
AAAAACAC
AAAAACAC
AAAAACAG
AAAAACAG
AAAAACAT
AAAAACAT
65530 1151 Kbytes .Supplementary file Size Download File type/resource GPL24084_HK_design.txt.gz
878.3 Kb
(ftp) (http) TXT
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