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Platform GPL24241 Query DataSets for GPL24241
Status Public on Nov 08, 2017
Title Agilent-065755 EatonDrosophila2 065600
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description AdditionalProbes added

Arrays of this design have barcodes that begin with 16065755 or 2565755.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 07, 2017
Last update date Nov 08, 2017
Contact name Jorge Azpurua
Organization name Stony Brook University
Department Anesthesiology
Lab Dubnau
Street address 100 Nicolls Rd
City Stony Brook
State/province New York
ZIP/Postal code 11794
Country USA
 
Samples (16) GSM2844090, GSM2844091, GSM2844092, GSM2844093, GSM2844094, GSM2844095 
Series (1)
GSE106632 Transcriptome profiling of Drosophila motor neurons with age

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
CUST_8762_PI429798866 CUST_8762_PI429798866 FALSE FBtr0334976 unmapped AGACCGACATGAGAACTCGTTTGCTAAATTCTAGGGCCTTGCAAAGTCATCTAATTTTAA
A_09_P023181 A_09_P023181 FALSE NM_001273612 35116 MESR3 Misexpression suppressor of ras 3 FBgn0032694 fly|FBtr0081073|fly|FBtr0329971|fly|FBtr0343808|fly|FBtr0329972 chr2L:18661714-18661773 dm|2L36F9 Misexpression suppressor of ras 3 [Source:FlyBase gene name;Acc:FBgn0032694] [FBtr0081073] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0046580(negative regulation of Ras protein signal transduction) TTCATATTTTGCCTGTGCAAAACAATCGCGAGAATCAAATAAAGCTGACAAAGAGAGCCA
A_09_P175135 A_09_P175135 FALSE CO342659 Dm.32684 gb|CO342659 chr2L:12456678-12456887 dm|2L33E5 EP15305.3prime Exelixis FlyTag CK02 pCDNA-SK+ Drosophila melanogaster cDNA clone EP15305 3, mRNA sequence [CO342659] TTCATATTTATGATGTAGTTAATATTTCCCCATGTATTTTTACAATAAAAGTTATTTTTA
A_09_P079741 A_09_P079741 FALSE NM_142527 NM_142527 42295 Ppcs Phosphopantothenoylcysteine synthetase FBgn0261285 fly|FBtr0083752|fly|FBtr0330044|ref|NM_142527|ref|NM_169848 chr3R:14964910-14964851 dm|3R91F3 Phosphopantothenoylcysteine synthetase [Source:FlyBase gene name;Acc:FBgn0261285] [FBtr0083752] GO:0004632(phosphopantothenate--cysteine ligase activity)|GO:0007297(ovarian follicle cell migration)|GO:0007303(cytoplasmic transport, nurse cell to oocyte)|GO:0007476(imaginal disc-derived wing morphogenesis)|GO:0015937(coenzyme A biosynthetic process)|GO:0022416(chaeta development)|GO:0030036(actin cytoskeleton organization)|GO:0030708(germarium-derived female germ-line cyst encapsulation)|GO:0030713(ovarian follicle cell stalk formation)|GO:0046843(dorsal appendage formation)|GO:0055091(phospholipid homeostasis)|GO:0070328(triglyceride homeostasis) GTACCATATGCCGTACTAAGGTCTAGTATCCATATACATATACATCTACAAAGATACATC
A_09_P182835 A_09_P182835 FALSE tc|TC239131 chr2L:8376603-8376544 dm|2L29B3 Rep: RE71283p - Drosophila melanogaster (Fruit fly), partial (43%) [TC239131] TTACATAACTAATGCCACACTTTTGTGTCCACATTTCCAGGCGCAGTACTTCTCCGATGC
A_09_P071536 A_09_P071536 FALSE NM_143107 NM_143107 43044 CG11858 CG11858 gene product from transcript CG11858-RA FBgn0039305 fly|FBtr0084815|ref|NM_143107|dgc|RH66629|gb|AY071761 chr3R:21088465-21088524 dm|3R96C8 This gene is referred to in FlyBase by the symbol Dmel\CG11858 (FBgn0039305). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function</span>: peptidyl-prolyl cis-trans isomerase activity. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Peptidyl-prolyl cis-trans isomerase, PpiC-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [FBtr0084815] GO:0003755(peptidyl-prolyl cis-trans isomerase activity) GCATGTGTCTGCTCCAACCAAACTGTTTACTTGTTTCGAATTTGCAATTTAAAAACATTG
A_09_P009041 A_09_P009041 FALSE NM_137467 37092 CG14502 CG14502 gene product from transcript CG14502-RC FBgn0034321 fly|FBtr0086757|fly|FBtr0301546|fly|FBtr0086756|fly|FBtr0340332 chr2R:14182098-14182157 dm|2R55C2 This gene is referred to in FlyBase by the symbol Dmel\CG14502 (FBgn0034321). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Protein of unknown function DUF1091. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed within 00-12 hour embryonic stages, in stages of adults of both sexes. [FBtr0086757] TCTGATTTCCACGTGGGCGATCACTTAAATAGGTATTATCAAAAGTACCTATGTATATTC
A_09_P102905 A_09_P102905 FALSE NM_001260087 41225 Mical Molecule interacting with CasL FBgn0053208 fly|FBtr0306610|fly|FBtr0306609|fly|FBtr0082209|fly|FBtr0306608 chr3R:5828247-5828131 dm|3R85F5 Molecule interacting with CasL [Source:FlyBase gene name;Acc:FBgn0053208] [FBtr0306610] GO:0003779(actin binding)|GO:0005829(cytosol)|GO:0005886(plasma membrane)|GO:0007411(axon guidance)|GO:0008270(zinc ion binding)|GO:0016322(neuron remodeling)|GO:0019417(sulfur oxidation)|GO:0030042(actin filament depolymerization)|GO:0043195(terminal button)|GO:0043914(NADPH:sulfur oxidoreductase activity)|GO:0045214(sarcomere organization)|GO:0048813(dendrite morphogenesis)|GO:0070995(NADPH oxidation) ACAACCGCATGACCACGAAGAATCGATCATTTGAATAGCCAACTTTCCCTGGAGATTGCT
A_09_P056016 A_09_P056016 FALSE NM_140466 NM_140466 39611 bmm brummer FBgn0036449 fly|FBtr0075699|fly|FBtr0300190|ref|NM_140466|ref|NM_001169974 chr3L:14769673-14769614 dm|3L70F5 brummer [Source:FlyBase gene name;Acc:FBgn0036449] [FBtr0075699] GO:0004806(triglyceride lipase activity)|GO:0005811(lipid particle)|GO:0006629(lipid metabolic process)|GO:0006642(triglyceride mobilization)|GO:0008340(determination of adult lifespan)|GO:0010884(positive regulation of lipid storage)|GO:0016042(lipid catabolic process)|GO:0019433(triglyceride catabolic process)|GO:0055088(lipid homeostasis) CGACTTGTATTACATCCAAATCCCCATCTGTGTTTAGCCTAAGTTGATAATGTATAAACA
A_09_P010661 A_09_P010661 FALSE NM_079000 NM_079000 36428 Mdr49 Multi drug resistance 49 FBgn0004512 fly|FBtr0087801|fly|FBtr0302198|ref|NM_079000|ref|NM_001169661 chr2R:8827924-8827865 dm|2R49E1 Multi drug resistance 49 [Source:FlyBase gene name;Acc:FBgn0004512] [FBtr0087801] GO:0001666(response to hypoxia)|GO:0005524(ATP binding)|GO:0005886(plasma membrane)|GO:0005887(integral to plasma membrane)|GO:0006855(drug transmembrane transport)|GO:0008354(germ cell migration)|GO:0015238(drug transmembrane transporter activity)|GO:0015893(drug transport)|GO:0016021(integral to membrane)|GO:0031427(response to methotrexate)|GO:0042623(ATPase activity, coupled)|GO:0042626(ATPase activity, coupled to transmembrane movement of substances)|GO:0055085(transmembrane transport) GCGAACTGGAGTGATAATTGTTAGGCTTTAATTTAGTATGTACACTAGGCTAATTGAACA
CUST_9080_PI429798866 CUST_9080_PI429798866 FALSE FBtr0088246 unmapped GTCTACAGTTACCTAAATACATCCATCGGGTACATTGAAATGCCAGTACTGAGTGTTATG
CUST_10610_PI429798866 CUST_10610_PI429798866 FALSE FBtr0344084 unmapped GATATGACGAAGCCACAATTAAAGAGTGGTATAAGGGATTTAAGCAAGATTGCCCCAACG
A_09_P043381 A_09_P043381 FALSE NM_001042952 3355130 lt light FBgn0002566 fly|FBtr0111123|fly|FBtr0111125|fly|FBtr0111124|fly|FBtr0333518 chr2L:22833200-22833259 light [Source:FlyBase gene name;Acc:FBgn0002566] [FBtr0111123] GO:0006726(eye pigment biosynthetic process)|GO:0006727(ommochrome biosynthetic process)|GO:0006886(intracellular protein transport)|GO:0006897(endocytosis)|GO:0007033(vacuole organization)|GO:0007041(lysosomal transport)|GO:0007220(Notch receptor processing)|GO:0008270(zinc ion binding)|GO:0008340(determination of adult lifespan)|GO:0033227(dsRNA transport)|GO:0046907(intracellular transport) GTTACCCCGGCGTCCTGTTAGGGGAATTAAGAATAAATAAACTTTATAGCTTAATTTCTT
A_09_P179245 A_09_P179245 FALSE tc|TC237091 chr3L:10865901-10865960 dm|3L67F1 Rep: CG7958-PC, isoform C - Drosophila melanogaster (Fruit fly), partial (19%) [TC237091] TAATAAATCCTTTAAATCCTTTTCCGCTTGCAGTCGCACCTGTTCGTGCTGCAGCTAGTC
A_09_P186185 A_09_P186185 FALSE tc|TC240684 chr4:885214-885155 dm|4102E5 Rep: CG11148-PA, isoform A - Drosophila melanogaster (Fruit fly), partial (17%) [TC240684] ATATCGCTTGCATTTCTAGTATCTAACTAAATGGGTAACAGTTTTGCAATAGCTCGACTA
A_09_P066551 A_09_P066551 FALSE NM_135388 NM_135388 34177 fu2 CG9233 gene product from transcript CG9233-RB FBgn0029173 fly|FBtr0079674|fly|FBtr0332008|ref|NM_135388|ref|NM_001273324 chr2L:8466468-8466527 dm|2L29D1 fu2 [Source:FlyBase gene name;Acc:FBgn0029173] [FBtr0079674] GO:0003676(nucleic acid binding)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0005634(nucleus)|GO:0008270(zinc ion binding) AGTCATCTGACTATTGTCTGCCAAAATGTAGCTTAGTGGTTTTTAATAAAAGGCCAAATC
A_09_P033961 A_09_P033961 FALSE NM_140713 NM_140713 39932 brv2 brivido-2 FBgn0036712 fly|FBtr0075242|fly|FBtr0331846|ref|NM_140713|ref|NM_001275053 chr3L:17335217-17335158 dm|3L74A5 brivido-2 [Source:FlyBase gene name;Acc:FBgn0036712] [FBtr0075242] GO:0005262(calcium channel activity)|GO:0005509(calcium ion binding)|GO:0006816(calcium ion transport)|GO:0016020(membrane)|GO:0048812(neuron projection morphogenesis)|GO:0050960(detection of temperature stimulus involved in thermoception)|GO:0070417(cellular response to cold) GCTATGTATTATTAACTACTTTGTTTTATGCCGCACGGCATTAATAAATGCGTTCCAGTC
A_09_P216110 A_09_P216110 FALSE tc|TC239503 chr3RHet:000215922-000215863 GCCTTCAGCAATAACCGTTTCGGTTTTAAATACCCTTTGCTCATCAAAGTATTTTTTGAT

Total number of rows: 45422

Table truncated, full table size 24306 Kbytes.




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Supplementary file Size Download File type/resource
GPL24241_GEO065755_PLATFORM.txt.gz 8.1 Mb (ftp)(http) TXT

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