GEO help: Mouse over screen elements for information.
Status
Public on Jul 25, 2018
Title
Qiagen RT² Profiler Custom PCR Array CLAH22469A
Technology type
RT-PCR
Distribution
virtual
Organism
Homo sapiens
Manufacturer
Qiagen
Manufacture protocol
see manufacturer's website
Catalog number
CLAH22469A
Description
Custom designed array for human samples
Submission date
Feb 13, 2018
Last update date
Feb 13, 2018
Contact name
Jonathan Baio
E-mail(s)
jbaio@llu.edu
Organization name
Loma Linda University School of Medicine
Department
Pathology and Human Anatomy
Lab
Kearns-Jonker
Street address
24941 Stewart St, Room 326
City
Loma Linda
State/province
CA
ZIP/Postal code
92354
Country
USA
Samples (12)
GSM3001053 , GSM3001054 , GSM3001055 , GSM3001056 , GSM3001057 , GSM3001058
Series (2)
GSE110560
Real-time quantitative PCR analysis of human cardiovascular progenitor cells flown aboard the International Space Station [Custom mRNA array]
GSE110563
Real-time quantitative PCR analysis of human cardiovascular progenitor cells flown aboard the International Space Station
Data table header descriptions
ID
GB_ACC
NCBI RNAseq transcipt identifier
SPOT_ID
Gene symbol
Gene Name
Gene name
Alias
Alternative gene names
RT2 Catalog
Manufacturer transcript identifier
Data table
ID
GB_ACC
SPOT_ID
Gene Name
Alias
RT2 Catalog
A01
NM_033131
WNT3A
"wingless-type MMTV integration site family, member 3A"
"MGC119418, protein Wnt-3a, MGC119420, OTTHUMP00000035713, MGC119419"
PPH02772B
A02
NM_001098209
CTNNB1
"catenin (cadherin-associated protein), beta 1, 88kDa"
"CTNNB, beta-catenin, OTTHUMP00000162082, OTTHUMP00000165222, OTTHUMP00000209289, catenin beta-1, catenin (cadherin-associated protein), beta 1 (88kDa, catenin (cadherin-associated protein), beta 1 (88kD), OTTHUMP00000209288, OTTHUMP00000165223, OK/SW-cl.35"
PPH00643F
A03
NM_001146156
GSK3B
Glycogen synthase kinase 3 beta
-
PPH00787C
A04
NM_001256105
WNT5A
"wingless-type MMTV integration site family, member 5A"
"hWNT5A, WNT-5A protein, protein Wnt-5a, WNT-5A protein precursor, OTTHUMP00000212837, OTTHUMP00000212861"
PPH02410A
A05
NM_003395
WNT9A
"wingless-type MMTV integration site family, member 9A"
"wingless-type MMTV integration site family, member 14, MGC138165, WNT14, OTTHUMP00000035712, protein Wnt-9a"
PPH02773H
A06
NM_001664
RHOA
"Ras homolog gene family, member A"
ARH12/ARHA/RHO12/RHOH12
PPH00305G
A07
NM_001039802
CDC42
cell division cycle 42
"G25K, OTTHUMP00000002834, OTTHUMP00000002927, growth-regulating protein, small GTP binding protein, cell division cycle 42, cell division control protein 42 homolog, GTP-binding protein, 25kD, GTP binding protein, 25kDa, OTTHUMP00000002926, dJ224A6.1.1 (cell division cycle 42 (GTP-binding protein, 25kD)), small GTP binding protein CDC42, cell division cycle 42 (GTP-binding protein, 25kD), CDC42Hs, G25K GTP-binding protein, cell division cycle 42 (GTP binding protein, 25kD), dJ224A6.1.2 (cell division cycle 42 (GTP-binding protein, 25kD)), RP1-224A6.5"
PPH00729E
A08
NM_006908
RAC1
"ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)"
"ras-related C3 botulinum toxin substrate 1, TC-25, rho family, small GTP binding protein Rac1, ras-like protein TC25, OTTHUMP00000151196, ras-related C3 botulinum toxin substrate 1 isoform Rac1, cell migration-inducing gene 5 protein, ras-related C3 botulinum toxin substrate 1 isoform Rac1b, migration-inducing protein 5, MGC111543, OTTHUMP00000151197, MIG5, migration-inducing gene 5, p21-Rac1"
PPH00733F
A09
NM_002660
PLCG1
"phospholipase C, gamma 1"
"PLC1, PLC148, 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1, OTTHUMP00000178982, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, PLCgamma1, inositoltrisphosphohydrolase, PLC-gamma-1, phospholipase C gamma 1, phosphoinositide phospholipase C, triphosphoinositide phosphodiesterase, 1-phosphatidyl-D-myo-inositol-4,5-bisphosphate, phospholipase C-148, PLC-148, PLC-II, monophosphatidylinositol phosphodiesterase, OTTHUMP00000031787, phospholipase C, gamma 1 (formerly subtype 148), phospholipase C-gamma-1, phosphoinositidase C, phosphatidylinositol phospholipase C, 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1, phosphoinositide phospholipase C-gamma-1, phospholipase C-II, RP3-511B24.2"
PPH00710A
A10
NM_001099952
ITPR1
"inositol 1,4,5-trisphosphate receptor, type 1"
"IP3R, spinocerebellar ataxia 16, inositol 1,4,5-trisphosphate receptor type 1, type 1 InsP3 receptor, inositol 1,4,5-triphosphate receptor, type 1, IP3 receptor, Insp3r1, type 1 inositol 1,4,5-trisphosphate receptor, OTTHUMP00000207085, OTTHUMP00000209578, spinocerebellar ataxia 15, IP3R1, IP3R 1, OTTHUMP00000207084, protein phosphatase 1, regulatory subunit 94"
PPH12766A
A11
NM_001165928
DAG1
dystroglycan 1 (dystrophin-associated glycoprotein 1)
"dystroglycan 1, dystroglycan, DAG, 156DAG, OTTHUMP00000210857, OTTHUMP00000210844, A3a, alpha-dystroglycan, beta-dystroglycan, Dystrophin-associated glycoprotein-1, AGRNR, OTTHUMP00000210858"
PPH10009A
A12
NM_002737
PRKCA
"Protein kinase C, alpha"
"PKCA, protein kinase C, alpha polypeptide, PKC-A, MGC129900, protein kinase C alpha type, PKC-alpha, PRKACA, aging-associated gene 6, AAG6, MGC129901"
PPH00977C
B01
NM_001178130
EGF
Epidermal growth factor
HOMG4/URG
PPH00137B
B02
NM_005228
EGFR
Epidermal growth factor receptor
ERBB/ERBB1/HER1/NISBD2/PIG61/mENA
PPH00138B
B03
NM_001127891
MMP2
"matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)"
"CLG4, MMP-2, 72 kDa gelatinase, OTTHUMP00000164261, gelatinase neutrophil, MONA, matrix metalloproteinase 2, MMP-II, CLG4A, 72 kDa type IV collagenase, neutrophil gelatinase, matrix metalloproteinase 2 (gelatinase A, 72kD gelatinase, 72kD type IV collagenase), 72kD type IV collagenase, TBE-1, matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase), matrix metalloproteinase-II, gelatinase A, matrix metalloproteinase-2, collagenase type IV-A"
PPH00151B
B04
NM_002423
MMP7
"Matrix metallopeptidase 7 (matrilysin, uterine)"
MMP-7/MPSL1/PUMP-1
PPH00809E
B05
NM_002086
GRB2
Growth factor receptor-bound protein 2
ASH/EGFRBP-GRB2/Grb3-3/MST084/MSTP084/NCKAP2
PPH00714C
B06
NM_000660
TGFB1
"transforming growth factor, beta 1"
"CED, transforming growth factor, beta 1, Camurati-Engelmann disease, DPD1, diaphyseal dysplasia 1, progressive, transforming growth factor, beta 1 (Camurati-Engelmann disease), transforming growth factor beta 1, transforming growth factor-beta 1, TGF-beta-1, transforming growth factor beta-1, TGFB, latency-associated peptide, TGF-beta 1 protein, prepro-transforming growth factor beta-1"
PPH00508A
B07
NM_002880
RAF1
V-raf-1 murine leukemia viral oncogene homolog 1
CMD1NN/CRAF/NS5/Raf-1/c-Raf
PPH00227F
B08
NM_000020
ACVRL1
activin A receptor type II-like 1
"HHT, ORW2, ALK-1, HHT2, Activin A receptor, type II-like kinase 1, ALK1, SKR3, TGF-B superfamily receptor type I, serine/threonine-protein kinase receptor R3, ACVRLK1, activin receptor-like kinase 1"
PPH01915F
Total number of rows: 96 Table truncated, full table size 25 Kbytes .
Supplementary data files not provided