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Platform GPL24807

Query DataSets for GPL24807

Status

Public on Mar 03, 2021

Title

Agilent-075649 B. animalis 14602

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Bifidobacterium animalis

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Arrays of this design have barcodes that begin with 16075649 or 2575649.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Apr 03, 2018

Last update date

Mar 03, 2021

Contact name

Francesca Bottacini

Organization name

University College Cork

Department

APC Microbiome Institute & School of Microbiology

Street address

Western Road

City

Cork

ZIP/Postal code

ND

Country

Ireland

Samples (4)

GSM3074523, GSM3074524, GSM3074525, GSM3074526

Series (1)

Comprehensive genomic, phenotypic and transcriptomic approaches to enhance Bifidobacterium animalis subsp. animalis growth and survival in milk

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
NAME	NAME
SPOT_ID	Spot identifier
CONTROL_TYPE	Control type
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
SEQUENCE	Sequence

Data table
ID	COL	ROW	NAME	SPOT_ID	CONTROL_TYPE	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SEQUENCE
1	266	170	GE_BrightCorner	GE_BrightCorner	pos
2	266	168	DarkCorner	DarkCorner	pos
3	266	166	DarkCorner	DarkCorner	pos
4	266	164	DarkCorner	DarkCorner	pos
5	266	162	DarkCorner	DarkCorner	pos
6	266	160	DarkCorner	DarkCorner	pos
7	266	158	DarkCorner	DarkCorner	pos
8	266	156	DarkCorner	DarkCorner	pos
9	266	154	DarkCorner	DarkCorner	pos
10	266	152	DarkCorner	DarkCorner	pos
11	266	150	DarkCorner	DarkCorner	pos
12	266	148	CUST_8786_PI430168269	CUST_8786_PI430168269	FALSE	CNCMI4602_1250	unmapped	GAACAGGTCGTGAACACCATTGCCGATACAAGTGCACAGAAGGAAACGTTGGTAACCAAC
13	266	146	CUST_10586_PI430168269	CUST_10586_PI430168269	FALSE	CNCMI4602_1505	unmapped	CTCGATTCTCGGCAATATTCCCGAACTGGTCAAGCTGCTCGCATTGCCGAAGTACACATA
14	266	144	CUST_4171_PI430168269	CUST_4171_PI430168269	FALSE	CNCMI4602_0608	unmapped	GAATTCTCGAACCTCCAGACCGCACTCGCCACACCGGGCACCGATTTGCGCATCTTCTCG
15	266	142	CUST_6447_PI430168269	CUST_6447_PI430168269	FALSE	CNCMI4602_0927	unmapped	CAAGCCGGAGCCGGAGGAGATCCCGGTTCAGGTGAACATCCAGTACGTGGTCGAATTCTA
16	266	140	CUST_6236_PI430168269	CUST_6236_PI430168269	FALSE	CNCMI4602_0896	unmapped	GAATCTTGACCTCCATGTCAAGGTGGCGAAGAACTGGCAATCCGACCCCAAGAAACTCGA
17	266	138	CUST_1_PI430168269	CUST_1_PI430168269	FALSE	CNCMI4602_0001	unmapped	AAACATATCGCCGACAAGATGCAGGAGAAACAGGAGATCTACAACTATGTGAACGAGCTC
18	266	136	CUST_3146_PI430168269	CUST_3146_PI430168269	FALSE	CNCMI4602_0463	unmapped	CTTGACGTGGCCGGTGAAATCGCCGCCATCGGGCCGGATGTCTCCGAGGACTGGCATCTG
19	266	134	CUST_1532_PI430168269	CUST_1532_PI430168269	FALSE	CNCMI4602_0228	unmapped	CGTGTGCACGTATGACGAGGTGGATGCGAAGACCGGTGAGACGGTCTCGGTCACGATCAG
20	266	132	CUST_5631_PI430168269	CUST_5631_PI430168269	FALSE	CNCMI4602_0812	unmapped	GTAGATATCAGCCATAAGGAGCTGAGCATGTACGACAATCTCGATCGTGAGGGCAATGTG

Total number of rows: 45220

Table truncated, full table size 6376 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL24807_075649_D_GEO_20150519.txt.gz	1.5 Mb	(ftp)(http)	TXT

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