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Platform GPL25530 Query DataSets for GPL25530
Status Public on Sep 16, 2018
Title Agilent-084349 50005412
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Campylobacter jejuni
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16084349 or 2584349.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 04, 2018
Last update date Sep 05, 2018
Contact name ayako watanabe
E-mail(s) aya_wata@affrc.go.jp
Organization name National Agriculture and Food Research Organization
Department National Institute of Animal Health
Lab Division of Bacterial and Parasitic Disease, ntracellular Pathogen Unit
Street address 3-1-5 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-0856
Country Japan
 
Samples (2) GSM3375291, GSM3375292
Series (1)
GSE119472 Transcriptomic analysis of Campylobacter jejuni grown in medium containing serine as a main energy source

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 266 170 GE_BrightCorner CONTROL pos
2 266 168 DarkCorner CONTROL pos
3 266 166 DarkCorner CONTROL pos
4 266 164 DarkCorner CONTROL pos
5 266 162 DarkCorner CONTROL pos
6 266 160 DarkCorner CONTROL pos
7 266 158 DarkCorner CONTROL pos
8 266 156 DarkCorner CONTROL pos
9 266 154 DarkCorner CONTROL pos
10 266 152 DarkCorner CONTROL pos
11 266 150 DarkCorner CONTROL pos
12 266 148 CUST_2609_PI433861801 FALSE Cj0957location=complement(89829... unmapped TGATGAAGATTGTGTTTTGATTCGATTGGATGGGGAAGATGCTGCTTTGATGATAGGCAA
13 266 146 UNKNOWN ignore
14 266 144 CUST_1224_PI433861801 FALSE Cj0448location=complement(41514... unmapped GGGCGTGGTTTTGCTGTTGTTGCCGATGAAGTAAGAAAACTAGCTGAAAAAACACAAAAA
15 266 142 CUST_2558_PI433861801 FALSE Cjp19_location=complement(87822... unmapped TTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGATGTCATAAGTTCGAGTCTTATA
16 266 140 CUST_440_PI433861801 FALSE Cj0156location=complement(15841... unmapped CCACCAAAGCACTCAAGAATTTGTTCAAAAATTTCCAAATGCAATTATGGTTGATTTTCA
17 266 138 CUST_478_PI433861801 FALSE Cj0170_location=167050..167794 unmapped GCTTGCGTGAAGTAAAAGGATGTCCAAGTGGTAGATTGAGTGGTTCTTCATATATACGCT
18 266 136 CUST_4197_PI433861801 FALSE Cj1515location=complement(14503... unmapped GGATAGGGCAAATGAAATGGGTGAATTTTGGAGGAGGACATCACATCACTAAAAAAGGCT
19 266 134 CUST_3190_PI433861801 FALSE Cj1163location=complement(10940... unmapped AGCCATTATAGCTGTAGAAAAATGGCAAGATCATCAAAAGACCTTTGGGTATTTTCGTCT
20 266 132 UNKNOWN ignore

Total number of rows: 45220

Table truncated, full table size 5668 Kbytes.




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Supplementary data files not provided
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