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Platform GPL25556 Query DataSets for GPL25556
Status Public on Oct 01, 2018
Title Agilent-031173 Mtb-TRASH-350bp
Technology type in situ oligonucleotide
Distribution commercial
Organism Mycobacterium tuberculosis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Array for TRASH screen analysis, 60mer, 350bp apart

Arrays of this design have barcodes that begin with 16031173 or 2531173.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Sep 10, 2018
Last update date Oct 01, 2018
Contact name Evgeniya Nazarova
Organization name Cornell University
Department Microbiology & Immunology
Lab David Russell
Street address C5 103 VMC Cornell University
City Ithaca
State/province NEW YORK
ZIP/Postal code 14853
Country USA
 
Samples (6) GSM3382166, GSM3382167, GSM3382168, GSM3382169, GSM3382170, GSM3382171
Series (1)
GSE119753 TraSH analysis of Mycobacterium tuberculosis transposon mutants with reduced bodipy-palmitate uptake on the third day of resting bone marrow-derived macrophage infection

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_660_PI425796204 CUST_660_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GGTTCTCGGGTCCGGTCAGCGAGGTCCGGAGCGGGGCGGAAATTTCATTGAACAGCCGTA
5 96 156 CUST_11848_PI425796204 CUST_11848_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CGAGCCGGTCCGTAGGTTCAAGGCCTGCAGCATGGTTTCGTCGTGCTGGTTTTCGTGGCT
6 96 154 CUST_2476_PI425796204 CUST_2476_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GGCACCACAGTGAAATCCGAGCCGCGATTGTGCAGCGAAATGCCGGTGCCGGGCACCACC
7 96 152 CUST_338_PI425796204 CUST_338_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped TGTCTGGGCGCGCTGATCCACGTGGTCATGACGGCCAAACCCGAGCCGGATGGCTTAATC
8 96 150 CUST_1452_PI425796204 CUST_1452_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GTCCACCGCGTCGGGCACGGTGAAGCCGTGCGCCAACGCGGCGGCGATCGCGGTCGCCAG
9 96 148 CUST_4893_PI425796204 CUST_4893_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CCTGATGTCCTCCAGGCTCTGGTCGGGATGAGCTAGTGCGGTTCCCGAACTCGGCATCTT
10 96 146 CUST_12555_PI425796204 CUST_12555_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CCACCATTATTTGATGCGGTTTTTAGGCGGAGAGCTGTCCGACGAAGACCTCGAGGTAGC
11 96 144 CUST_3_PI425796204 CUST_3_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped TCAAATATGTCTCCACCGAGGAATTCACCAACGACTTCATTAACTCGCTCCGCGATGACC
12 96 142 CUST_11066_PI425796204 CUST_11066_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GGACGCCGAAGTCACGTTCGCCCGCGGCACCGGCGAGCCGCCCGGAATCGGGCGCGTTGG
13 96 140 CUST_12227_PI425796204 CUST_12227_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CGGCGTCTACCGCGGCATGCACCGCGTCGCGAGTGCGTTTGGTGACGGTTTCTCCGTCAT
14 96 138 CUST_7392_PI425796204 CUST_7392_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GCGTAGCCGTACAAGCGGTCGGCCCCGCGGAAGCCCCTGCTCAGTGAGCCGGCGATACCG
15 96 136 CUST_3770_PI425796204 CUST_3770_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped AACGGCCCACCGAGTGGTGGCGGTGGCCACCGCCTCGGGCTTGCCGGTGCGCGGCGTGCT
16 96 134 CUST_2413_PI425796204 CUST_2413_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped AGATGCGCACGCCGTCGAGCCGGCGCAGCCCACTGCCGCCGACGTCGTCGCGGCAATAGA
17 96 132 CUST_8252_PI425796204 CUST_8252_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped GAGCCGGCTGGCTGCGGCCGTGCGAATGCCAGCCGGCGACCCGGTGGAATCCGGTGACGA
18 96 130 CUST_10979_PI425796204 CUST_10979_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CTCATTGTTTTTCGCCTCCGGGCAATTGCGAGAATTGGCTTACTCAGTTGAAACGACGGC
19 96 128 CUST_11235_PI425796204 CUST_11235_PI425796204 FALSE emb|AL123456.2|gi|41353971 unmapped CGGGACGGGCGGTACCGGCGGCGCCGGTGGCGCCGGCGGTCGCGGCGCACTGCTGCTGGG
20 96 126 CUST_2_PI418159197 CUST_2_PI418159197 FALSE Rv0002 unmapped ATCTTGTTGTTGACTATGCCGGTGAACCATTGACGATTGCGTTTAACCCAACCTATCTAA

Total number of rows: 15744

Table truncated, full table size 2374 Kbytes.




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Supplementary data files not provided

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