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Platform GPL25617 Query DataSets for GPL25617
Status Public on Dec 26, 2018
Title [Axiom_CjSNPms] Affymetrix Axiom Japanese cedar EST Custom Genotyping Array Axiom_Cjest_73K_v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Cryptomeria japonica
Manufacturer Affymetrix
Manufacture protocol see manufactuer's web site
 
 
Citation(s) 30439978
Submission date Sep 27, 2018
Last update date Dec 26, 2018
Contact name Yoichi Hasegawa
Organization name Niigata University
Department Graduate School of Science and Technology
Street address 8050, Ikarashi 2-Nocho, Nishi-ku
City Niigata
ZIP/Postal code 950-2181
Country Japan
 

Data table header descriptions
ID
Probeset ID
Affymetrix SNP ID
Chromosome
Physical position
Chromosome custom ID
Flanking sequence
Allele_A
Allele_B

Data table
ID Probeset ID Affymetrix SNP ID Chromosome Physical position Chromosome custom ID Flanking sequence Allele_A Allele_B
A00001 AX-174127306 Affx-281688756 evgc71277_g1_i1 1235 evgc71277_g1_i1_1235 AATATCACTCTGTTGTTGGATTGGAAACTTTAAAC[A/G]TGGAAAACTTGGGATTGGAGATAAACAGTTTTCTT A G
A00002 AX-174142467 Affx-282164269 evgc81922_g4_i3 493 evgc81922_g4_i3_493 CCAGGTTTAATTACTCCGTTGAGACGGAGGGATTT[C/G]TTACTCACAGGACCCGGATAATTACCTATGCGGAA C G
A00003 AX-174179950 Affx-282454702 evgc76373_g1_i2 56 evgc76373_g1_i2_56 TGCTTGGTATGCTTTCTGAGGGTTTGGGGTTGGAC[C/T]CTAATTATTTTCGCACCCTTATCAAGGAATCCCTG T C
A00004 AX-174148957 Affx-282362122 evgc79159_g1_i1 2205 evgc79159_g1_i1_2205 TCAACTGAAGATTCTTCGCAGGTTTTTAAATTATT[C/T]GCCACAAAAGTTGCGGCAACAAATTATACACCTAG T C
A00005 AX-115705453 Affx-114264716 evgc77258_g2_i1 1749 evgc77258_g2_i1_1749 TCTCAGAGTGAACTAATAAGCAGCTTGCAATACCG[A/G]CTTGAAATTGCAAACAAGAGGGCAGAGACTGCCGA A G
A00006 AX-174174046 Affx-281512101 evgCMFL008_A01 690 evgCMFL008_A01_690 ATGCACTCTGGACGACCACTTGAGAGGAAATTGTA[G/T]AGGGTTTACCTACAATTGGAAGCAGAGCTTCAAAA T G
A00007 AX-115687770 Affx-114288028 evgCLFL003_C07 1423 evgCLFL003_C07_1423 AGTTGAAGCTGAGAATTCAGCGAAGGAAGCAGTTA[C/T]GAAAGAAATTTTATCAGAGATGGTAACAAGAGAGG T C
A00008 AX-174156802 Affx-282830768 evgc77930_g1_i3 209 evgc77930_g1_i3_209 CCTCATCCTTCTCACATAATTCAGGTCTATACGGT[G/T]TACAGGTGAAAGAGTCATGGTCGCCTTCGCCAAAG T G
A00009 AX-174146109 Affx-282266837 SNPg00860 270 SNPg00860_270 TATTGATATTGCCCAAGTAATAGATAATCTAAGTC[A/G]GTGATGATATGATAAGAAGAGCATTACTAATATCA A G
A00010 AX-174113176 Affx-114251837 evgd44675c69076_g1_i1 1274 evgd44675c69076_g1_i1_1274 ATTAACGTTGCTGCTATTAAAGCTCCTAGCTTTGG[A/G]GAGAGACGGAAGGCTGTTCTCCAAGATATTGCTAT A G
A00011 AX-174137332 Affx-281887599 evgc25116_1_2216 223 evgc25116_1_2216_223 TTCGTGGATTTCTAAGGGTTAAAAATGAAAAAGGT[A/G]ACACCGCCTTTCACGAAGCTGCAATTGGAGGTCAT A G
A00012 AX-174120141 Affx-282527601 evgc78231_g1_i11 1750 evgc78231_g1_i11_1750 CTATAGTATAGCAAGTCACGTGACTAGAAATGAAA[C/T]GTATAAGCCATGTATGACTTATGATGAATTTGTCA T C
A00013 AX-153644580 Affx-281454840 evgc78386_g1_i1 893 evgc78386_g1_i1_893 AAGCCATACACAACAGACATACTGATGATAACATC[C/T]GGTCAAACCGTAGATGCTCTTCTCACAGCCAATCA T C
A00014 AX-174153359 Affx-282712610 evgc79872_g4_i2 761 evgc79872_g4_i2_761 CCGCAAGATTATATAGATTTTCTCTGCTCTCTCAA[C/T]TACACCAAGATACAAATTGCTCTTCTCACCAAGAA T C
A00015 AX-115669649 Affx-114292005 evgc76785_g1_i2 1916 evgc76785_g1_i2_1916 CCATCGAATTTTGTACTGTGTTTTCAATGCCAAAT[C/T]TAACTAGGAACCATGTTATCACCTTTTTCTATCCT T C
A00016 AX-174113402 Affx-282683225 evgc77970_g5_i3 5446 evgc77970_g5_i3_5446 ACTTGTGTGCATGGATGCAAGTGTCTATGAAGAAA[G/T]TAATCAAAAGTGACCTGGTTATAGGCACTGCTTAA T G
A00017 AX-174114134 Affx-282713266 evgd54042c74425_g3_i1 1470 evgd54042c74425_g3_i1_1470 AGTAGACATCATTAAAAAAATCTTTATTCATTCAT[C/T]GTGCAGGTAGATATTAATTAGAAAGCTTCATTCAT T C
A00018 AX-174179951 Affx-282460586 estSNP03493 326 estSNP03493_326 AGGACACTTTCCACTGGCTCAGAGCTTTTATTCTT[A/C]TCTCCAACAGCTTTGGACATCCCAAACATCTTATT A C
A00019 AX-174157294 Affx-282407802 evgc1575_7_1774 57 evgc1575_7_1774_57 CAAAAAAAGGAACCAAAGAAACCCCGAACGGGAAT[A/T]TTTTTCTCCTCTTCTCTTTATTTTGTGTACTACCT A T
A00020 AX-174152216 Affx-282664657 evgc66106_g2_i2 701 evgc66106_g2_i2_701 ATGGGCAAAGTTCTTTGATGAAGCTGTGGGATTCA[C/G]ACTCAATCCTCCATTTGATCCATATGCCAATTCTG C G

Total number of rows: 73434

Table truncated, full table size 11248 Kbytes.




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Supplementary file Size Download File type/resource
GPL25617_Axiom_CjSNPms.r1.cdf.gz 2.4 Mb (ftp)(http) CDF

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