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Platform GPL25621 Query DataSets for GPL25621
Status Public on Mar 19, 2019
Title mouse exonic evidence-based oligonucleotide (MEEBO) microarray [34288 probes]
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Stanford Functional Genomics Facility
Manufacture protocol https://microarray.org/sfgf/meebo.do
 
 
Submission date Sep 27, 2018
Last update date Mar 19, 2019
Contact name Dmitry Ivanov
E-mail(s) divanov@med.miami.edu
Phone 305-482-4230
Organization name University of Miami Miller School of Medicine
Department Ophthalmology
Street address 1638 NW 10th Avenue
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Samples (24) GSM3405380, GSM3405381, GSM3405382, GSM3463668, GSM3463669, GSM3463670 
Series (4)
GSE120588 Gene expression profiling of adult murine RPE
GSE120592 Gene expression, chromatin state and DNA methylome in retinal pigment epithelium (RPE)
GSE122301 Gene expression profiling of developing murine Müller glia

Data table header descriptions
ID
SPOT_ID Oligonucleotide ID
Block Position on the array
Row Position on the array
Column Position on the array
Probe_Name microarray probe name
Gene_ID Ensembl Gene ID
Chromosome Chromosome
Gene_Start Gene Start
Gene_End Gene End
Strand Strand
Exon_ID Ensembl Exon ID
Exon_Start Exon Start
Exon_End Exon End
Associated Gene Name Gene name
Gene Description Gene description
Biotype protein or RNA
SEQUENCE Probe sequence

Data table
ID SPOT_ID Block Row Column Probe_Name Gene_ID Chromosome Gene_Start Gene_End Strand Exon_ID Exon_Start Exon_End Associated Gene Name Gene Description Biotype SEQUENCE
1462 mMA031249 2 25 4 scl000871.1_20 ENSMUSG00000025916 1 9968624 10009136 -1 ENSMUSE00001371120 9978816 9978947 Ppp1r42 "protein phosphatase 1, regulatory subunit 42 [Source:MGI Symbol;Acc:MGI:1921138]" protein_coding ATAAAAGATATGGAAAGACAATTCCTAATGAATTGGAAAGCATCCAAAGATGCCAAGAAAATCAGCAAGA
4702 mMA031250 6 25 4 scl000833.1_81 ENSMUSG00000026304 1 90958133 90969661 -1 ENSMUSE00001209699;ENSMUSE00001312619 90961111;90961111 90961262;90961262 Rab17 "RAB17, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:104640]" protein_coding ACCAAAGCGTCTGCCACCTCTACTTCAGGGGTGCCAATGCTGCGCTCCTGGTTTATGACATCACTCGGAA
7942 mMA031251 10 25 4 scl000820.1_24 ENSMUSG00000025958 1 64532645 64604548 1 ENSMUSE00001324587;ENSMUSE00000259053 64550849;64550849 64550970;64550970 Creb1 cAMP responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:88494] protein_coding GAGCAGACAACCAGCAGAGTGGAGATGCTGCTGTAACAGAAGCTGAAAATCAACAAATGACAGTTCAAGC
11182 mMA031252 14 25 4 scl000557.1_27 ENSMUSG00000002345 8 70139499 70167488 1 ENSMUSE00001100900 70144498 70144597 Borcs8 BLOC-1 related complex subunit 8 [Source:MGI Symbol;Acc:MGI:1919618] protein_coding ACTCCTGTAGGTGTCCTCTGACCTCCACGGATGCCTCGGAAGATGCATCACCTCCATAAATAATTGGTTT
14422 mMA031253 18 25 4 scl000541.1_10 ENSMUSG00000024924 19 27216484 27254231 1 ENSMUSE00000146270;ENSMUSE00000898301 27246593;27245535 27246676;27247090 Vldlr very low density lipoprotein receptor [Source:MGI Symbol;Acc:MGI:98935] protein_coding TCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCT
17662 mMA031254 22 25 4 scl000531.1_111 ENSMUSG00000035171 19 21581202 21652976 -1 ENSMUSE00001050704 21615265 21615445 1110059E24Rik RIKEN cDNA 1110059E24 gene [Source:MGI Symbol;Acc:MGI:1913456] protein_coding TGCTGAGTCTCCTTTTACATAGAGTCATTCGTGTCTTGATTATTTGTTCAGTGCTTTTCCTGCTTCCTAG
20902 mMA031255 26 25 4 scl000512.1_5 GTGGACAGATATTCCGGCGCAGTTTATTATCTCTTGGGTTGTTCGGACATCGGCTTGGGCCCAGTCTTCT
24142 mMA031256 30 25 4 scl0004158.1_6 ENSMUSG00000029213 5 72156575 72168189 -1 ENSMUSE00001348387 72164755 72164854 Commd8 COMM domain containing 8 [Source:MGI Symbol;Acc:MGI:1343485] protein_coding TGGGGAACAGAAGTTCTGAGGTTAATGCAGTCCAGTTTGCCAGTCTTTCTTTTGGCGGGTAGTGCTGTCT
27382 mMA031257 34 25 4 scl000401.1_34 GCTGGATCTGCTCAATTTGGGAGAGTACAAAGAAATCTTCATCCGTCATGACGTCAGAGGGGCTGAACTT
30622 mMA031258 38 25 4 scl0004008.1_5 ENSMUSG00000015882 5 45697181 45857615 -1 ENSMUSE00000519686 45735731 45735824 Lcorl ligand dependent nuclear receptor corepressor-like [Source:MGI Symbol;Acc:MGI:2651932] protein_coding GGAGTGTTAGATCTCTCTACAAAGAAAACCAGCATAAAGTCTGAAGAGTCATCCATAAGTGATCCTTCTT
33862 mMA031259 42 25 4 scl0003844.1_101 ENSMUSG00000058589 10 89873509 90973300 1 ENSMUSE00001216343;ENSMUSE00001229605;ENSMUSE00001258376 90897349;90897247;90897247 90897426;90897426;90897426 Anks1b ankyrin repeat and sterile alpha motif domain containing 1B [Source:MGI Symbol;Acc:MGI:1924781] protein_coding GGGCGATGCAAGGAGGAGAAGAAATGAAAACTACTTTGATGATATTCCCCGATCAAAGCTGGAGAGGCAG
37102 mMA031260 46 25 4 scl0003832.1_25 ENSMUSG00000020056 10 88201093 88246158 1 ENSMUSE00001218379;ENSMUSE00001223513;ENSMUSE00001288670 88219250;88219253;88219250 88219360;88219360;88219360 Ccdc53 coiled-coil domain containing 53 [Source:MGI Symbol;Acc:MGI:1914532] protein_coding CACAGGAGAGTGAAGCGCCATCAGAAAATGTCCTGACCGTAGCCAAGGATCCACGGTATGCCAGATACCT
1463 mMA031261 2 25 5 scl0003759.1_6 ENSMUSG00000015937 13 56073619 56136361 -1 ENSMUSE00000245692 56088252 56088342 H2afy "H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]" protein_coding GTTGTTCAGGCTGACATTGCCTCGATCGACAGTGATGCTGTCGTTCACCCGACAAACACTGACTTCTACA
4703 mMA031262 6 25 5 scl0003741.1_43 ENSMUSG00000033102 13 64192545 64274973 -1 ENSMUSE00000681531 64201332 64201448 Cdc14b CDC14 cell division cycle 14B [Source:MGI Symbol;Acc:MGI:2441808] protein_coding CCTAACCTTTCTGGCAGTGCAGGCATTACTAAACGAACCACCAGATCTGCTTCGGGGAAAAGCAGTTTTA
7943 mMA031263 10 25 5 scl0003683.1_86 ENSMUSG00000005320 13 55152640 55168759 1 ENSMUSE00000863467;ENSMUSE00001302859;ENSMUSE00001301611 55156117;55156231;55156231 55156494;55156494;55156494 Fgfr4 fibroblast growth factor receptor 4 [Source:MGI Symbol;Acc:MGI:95525] protein_coding ACCGAGCGTGGTCGTCACTGGTACAAAGAGGGCAGCCGCCTAGCATCTGCTGGGCGAGTACGGGGTTGGA
11183 mMA031264 14 25 5 scl0003681.1_26 ENSMUSG00000025877 13 55005985 55021385 -1 ENSMUSE00000817922;ENSMUSE00000800212 55020770;55020770 55020904;55021217 Hk3 hexokinase 3 [Source:MGI Symbol;Acc:MGI:2670962] protein_coding AAGAAGCTCTTAATTCAAACATGTGTAGACTTTCGACTTGTTTCTGGTGACAGTGGAATGGAGACATGCC
14423 mMA031265 18 25 5 scl0003522.1_58 ENSMUSG00000032278 9 61953481 62026856 -1 ENSMUSE00000221744 61976072 61976199 Paqr5 progestin and adipoQ receptor family member V [Source:MGI Symbol;Acc:MGI:1921340] protein_coding CCTGCATCCTCAGCCTCTTCCAAATGACCAATGAGACCCTCAACATCTGGACGCACTTGCTACCCTTCTG
17663 mMA031266 22 25 5 scl0003521.1_94 ENSMUSG00000003308 9 21229730 21239332 -1 ENSMUSE00000217385 21231697 21231902 Keap1 kelch-like ECH-associated protein 1 [Source:MGI Symbol;Acc:MGI:1858732] protein_coding GCAGTGGGGGGCTTTGACGGGACTAACCGGCTTAACTCCGCAGAATGTTACTATCCAGAGAGGAATGAGT
20903 mMA031267 26 25 5 scl0003489.1_17 ENSMUSG00000047766 9 60568859 60688158 -1 ENSMUSE00000815866;ENSMUSE00000428176 60680510;60680505 60680702;60680702 Lrrc49 leucine rich repeat containing 49 [Source:MGI Symbol;Acc:MGI:2442689] protein_coding AATAAGTCCTTCGCCTCGTAATAAGTCATCATGCATCTCATCCACAACTAACGTGACAGACCTCTGTGGG
24143 mMA031268 30 25 5 scl0003443.1_419 ENSMUSG00000050471 9 35216965 35267805 -1 ENSMUSE00000802933 35266328 35267109 Fam118b "family with sequence similarity 118, member B [Source:MGI Symbol;Acc:MGI:1924483]" protein_coding AGTATATCCGGGAAACCAACTAGGCTGCTGTAATGTAGATGATCATTAATGAAGCCCCGTCCCATTCCGC

Total number of rows: 34288

Table truncated, full table size 9190 Kbytes.




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