NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL25622 Query DataSets for GPL25622
Status Public on Sep 28, 2018
Title Exiqon LNA modified oligonucleotide capture probes microRNA array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Center for Biomics, Erasmus MC, Rotterdam
Manufacture protocol The LNA-based capture probeset was acquired from Exiqon and spotted on Nexterion E-slides using a Virtek Chipwriter Pro.
 
Description In house generated microRNA arrays based on locked nucleic acid (LNA™) modified oligonucleotides spotted in duplicate on Nexterion E slides. The capture probeset is based on miRBase version 10, annotation version 13.
The capture probeset consists of 1344 probes of which 577 are capable of detecting murine miRNAs.
 
Submission date Sep 27, 2018
Last update date Sep 28, 2018
Contact name Erik Wiemer
E-mail(s) e.wiemer@erasmusmc.nl
Phone +31-10-7044357
Organization name Erasmus University Medical Center
Department Medical Oncology
Street address Wytemaweg 80
City Rotterdam
ZIP/Postal code 3015 CN
Country Netherlands
 
Samples (11) GSM3405395, GSM3405396, GSM3405397, GSM3405398, GSM3405399, GSM3405400 
Series (1)
GSE120593 microRNA expression in gastrocnemicus muscle of control, SB431542 treated and cachectic mice

Data table header descriptions
ID capture probe ID
miRNA_ID miRBase ID
Annotation.1 Name of the human reference sequence
Annotation.2 Name of the mouse reference sequence
Annotation.3 Name of the rat reference sequence

Data table
ID miRNA_ID Annotation.1 Annotation.2 Annotation.3
05740 mmu-miR-21 [05740] mmu-miR-21 [05740] hsa-miR-21 [05740] rno-miR-21
11043 mmu-miR-302b [11043] mmu-miR-302b [11043] hsa-miR-302b
10306 mmu-miR-146b [10306] mmu-miR-146b [10306] hsa-miR-146b-5p [10306] rno-miR-146b
11052 mmu-miR-31 [11052] mmu-miR-31 [11052] hsa-miR-31 [11052] rno-miR-31
10919 mmu-miR-103 [10919] mmu-miR-103 [10919] hsa-miR-103 [10919] rno-miR-103
17909 mmu-miR-31* [17909] mmu-miR-31* [17909] hsa-miR-31*
17608 mmu-miR-425 [17608] mmu-miR-425 [17608] hsa-miR-425 [17608] rno-miR-425
42534 mmu-let-7i* [42534] mmu-let-7i* [42534] hsa-let-7i* [42534] rno-let-7i*
42451 mmu-miR-139-3p [42451] mmu-miR-139-3p [42451] hsa-miR-139-3p [42451] rno-miR-139-3p
42724 mmu-miR-34b-3p [42724] mmu-miR-34b-3p [42724] hsa-miR-34b
42827 mmu-miR-652 [42827] mmu-miR-652 [42827] hsa-miR-652 [42827] rno-miR-652
42924 mmu-miR-33* [42924] mmu-miR-33* [42924] hsa-miR-33a*
11225 mmu-miR-322* [11225] mmu-miR-322* [11225] rno-miR-322*
11230 mmu-miR-344 [11230] mmu-miR-344
11238 mmu-miR-380-3p [11238] mmu-miR-380-3p
11239 mmu-miR-383 [11239] mmu-miR-383 [11239] rno-miR-383
11249 mmu-miR-463* [11249] mmu-miR-463*
42449 mmu-miR-293* [42449] mmu-miR-293*
42764 mmu-miR-412 [42764] mmu-miR-412 [42764] hsa-miR-412 [42764] rno-miR-412
42462 mmu-miR-883a-5p [42462] mmu-miR-883a-5p

Total number of rows: 577

Table truncated, full table size 36 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap