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Status
Public on Dec 31, 2019
Title
Agilent-062611 Francisella noatunensis subsp. orientalis [FNO_v3 062394]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Francisella orientalis
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Chip FNO12, assembly v1, fita v8, Locus tag interno Arrays of this design have barcodes that begin with 16062611 or 2562611. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jan 15, 2019
Last update date
Dec 31, 2019
Contact name
Henrique César Pereira Figueiredo
Organization name
AQUACEN - National Reference Laboratory for Aquatic Animal Diseases
Street address
Av. Antônio Carlos 6627, Caixa Postal 567, Pampulha
City
Belo Horizonte
State/province
Minas Gerais
ZIP/Postal code
30123970
Country
Brazil
Samples (8)
GSM3563717 , GSM3563718 , GSM3563719 , GSM3563720 , GSM3563721 , GSM3563722
Series (1)
GSE125115
Temperature change modulates pathogenicity of Francisella noatunensis subsp. orientalis to Nile tilapia but not the expression of its virulence genes
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
CLONE_ID
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
CLONE_ID
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
CUST_1208_PI429544192
CUST_1208_PI429544192
FALSE
FNO12_0423
unmapped
ATTTGGTCTAGGTGGGATTGGTCTAAATGTTATTCAAGGAGCGAAGTTAGTTGGAGCAGG
5
96
156
CUST_681_PI429544192
CUST_681_PI429544192
FALSE
FNO12_0238
unmapped
GGTGTTGTTTCTAATTCTGAGCACAACTTGAAGTCTTTAGGTAAAGCTGGTGCTAAGCGC
6
96
154
CUST_762_PI429544192
CUST_762_PI429544192
FALSE
FNO12_0266
unmapped
TGTCGGTTTAGTCAAAGATGTTGATCCTACAGTTATCCTAAAAGCTCTACCACAAGGGCT
7
96
152
CUST_4250_PI429544192
CUST_4250_PI429544192
FALSE
FNO12_1542
unmapped
TGCAGGTATAGCCATCATTGTGGATAATATCACCGTTATGCTACTATACCCTGTCTTTGT
8
96
150
CUST_65_PI429544294
CUST_65_PI429544294
FALSE
FNO12_0153
unmapped
AGAAGTTGGTATTGTTGAACAAGAGACTGACCGTAAAGGAATCAAAATTCTAAAGCCTGT
9
96
148
CUST_1525_PI429544192
CUST_1525_PI429544192
FALSE
FNO12_0539
unmapped
AGCCCAAATAATCTATGGTGTATTTTTGGTTGTGGTGGCAATAGGGATACTACCAAAAGA
10
96
146
CUST_469_PI429544192
CUST_469_PI429544192
FALSE
FNO12_0164
unmapped
AATCCAGACGGAGAGACTTCACATGCCACAAACAATAGAGCTAAACTAAGGGCTCTACTA
11
96
144
CUST_345_PI429544294
CUST_345_PI429544294
FALSE
FNO12_1586
unmapped
TGAACTCTCGAAACAATATGCTGACAAAGTCCCAGCTGAGTATATCAGACGCCAAACATT
12
96
142
CUST_369_PI429544294
CUST_369_PI429544294
FALSE
FNO12_1814
unmapped
TAGTTGTTACTGGCCTTGGTATGGTAACACCTTTAGGAAATGATGTCCCTACAACATGGG
13
96
140
CUST_278_PI429544294
CUST_278_PI429544294
FALSE
FNO12_1161
unmapped
ACCAGCAATGCTAGATAAAGCTAAAGAAGTTTCGGAGTGGATTAAATCAACTGGTAGAGA
14
96
138
CUST_1859_PI429544192
CUST_1859_PI429544192
FALSE
FNO12_0655
unmapped
TCCAGCTGCTGGGATAGGCTCGAGAATGGGATTAGATATTCCTAAGCAATATTACAAACT
15
96
136
CUST_270_PI429544294
CUST_270_PI429544294
FALSE
FNO12_1160
unmapped
TGGTAATTCAAGTGAGATTATGGGAATCATGCCAATGATTAAATACCTCGGTATACCAGT
16
96
134
CUST_377_PI429544294
CUST_377_PI429544294
FALSE
FNO12_1824
unmapped
TTCGCGTTGGATGTCACGTGTAAATTCTGAGCTACCCATCTATGCACTATCACGTAATTC
17
96
132
CUST_3233_PI429544192
CUST_3233_PI429544192
FALSE
FNO12_1162
unmapped
AGTTAAAGCTGGGATTACAGGATATGCTCAAGTTTTGAAAAGCTATGCAACTTTGCCGGA
18
96
130
CUST_160_PI429544294
CUST_160_PI429544294
FALSE
FNO12_0628
unmapped
TAGTTGGTCTTCAACCATTCCAAGCTCGTGAAGTAGCTTTCAAACTTGGTCTTGAAGGTA
19
96
128
CUST_2966_PI429544192
CUST_2966_PI429544192
FALSE
FNO12_1063
unmapped
TTGGCACGATTATGTTGATGGTATATTCTAATGAGGCTTATGCAGAATTATCTACTGCAA
20
96
126
CUST_4003_PI429544192
CUST_4003_PI429544192
FALSE
FNO12_1453
unmapped
ACTAGTCAAAGGCTTAGAGCCTGGTACTACCATTATCACATCAGGACAAAATAAAGTGCA
Total number of rows: 15744 Table truncated, full table size 2119 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL26043_062611_D_GEO_20131203.txt.gz
531.9 Kb
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