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Platform GPL26043 Query DataSets for GPL26043
Status Public on Dec 31, 2019
Title Agilent-062611 Francisella noatunensis subsp. orientalis [FNO_v3 062394]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Francisella orientalis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Chip FNO12, assembly v1, fita v8, Locus tag interno

Arrays of this design have barcodes that begin with 16062611 or 2562611.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jan 15, 2019
Last update date Dec 31, 2019
Contact name Henrique César Pereira Figueiredo
Organization name AQUACEN - National Reference Laboratory for Aquatic Animal Diseases
Street address Av. Antônio Carlos 6627, Caixa Postal 567, Pampulha
City Belo Horizonte
State/province Minas Gerais
ZIP/Postal code 30123970
Country Brazil
 
Samples (8) GSM3563717, GSM3563718, GSM3563719, GSM3563720, GSM3563721, GSM3563722 
Series (1)
GSE125115 Temperature change modulates pathogenicity of Francisella noatunensis subsp. orientalis to Nile tilapia but not the expression of its virulence genes

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CLONE_ID Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CLONE_ID CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_1208_PI429544192 CUST_1208_PI429544192 FALSE FNO12_0423 unmapped ATTTGGTCTAGGTGGGATTGGTCTAAATGTTATTCAAGGAGCGAAGTTAGTTGGAGCAGG
5 96 156 CUST_681_PI429544192 CUST_681_PI429544192 FALSE FNO12_0238 unmapped GGTGTTGTTTCTAATTCTGAGCACAACTTGAAGTCTTTAGGTAAAGCTGGTGCTAAGCGC
6 96 154 CUST_762_PI429544192 CUST_762_PI429544192 FALSE FNO12_0266 unmapped TGTCGGTTTAGTCAAAGATGTTGATCCTACAGTTATCCTAAAAGCTCTACCACAAGGGCT
7 96 152 CUST_4250_PI429544192 CUST_4250_PI429544192 FALSE FNO12_1542 unmapped TGCAGGTATAGCCATCATTGTGGATAATATCACCGTTATGCTACTATACCCTGTCTTTGT
8 96 150 CUST_65_PI429544294 CUST_65_PI429544294 FALSE FNO12_0153 unmapped AGAAGTTGGTATTGTTGAACAAGAGACTGACCGTAAAGGAATCAAAATTCTAAAGCCTGT
9 96 148 CUST_1525_PI429544192 CUST_1525_PI429544192 FALSE FNO12_0539 unmapped AGCCCAAATAATCTATGGTGTATTTTTGGTTGTGGTGGCAATAGGGATACTACCAAAAGA
10 96 146 CUST_469_PI429544192 CUST_469_PI429544192 FALSE FNO12_0164 unmapped AATCCAGACGGAGAGACTTCACATGCCACAAACAATAGAGCTAAACTAAGGGCTCTACTA
11 96 144 CUST_345_PI429544294 CUST_345_PI429544294 FALSE FNO12_1586 unmapped TGAACTCTCGAAACAATATGCTGACAAAGTCCCAGCTGAGTATATCAGACGCCAAACATT
12 96 142 CUST_369_PI429544294 CUST_369_PI429544294 FALSE FNO12_1814 unmapped TAGTTGTTACTGGCCTTGGTATGGTAACACCTTTAGGAAATGATGTCCCTACAACATGGG
13 96 140 CUST_278_PI429544294 CUST_278_PI429544294 FALSE FNO12_1161 unmapped ACCAGCAATGCTAGATAAAGCTAAAGAAGTTTCGGAGTGGATTAAATCAACTGGTAGAGA
14 96 138 CUST_1859_PI429544192 CUST_1859_PI429544192 FALSE FNO12_0655 unmapped TCCAGCTGCTGGGATAGGCTCGAGAATGGGATTAGATATTCCTAAGCAATATTACAAACT
15 96 136 CUST_270_PI429544294 CUST_270_PI429544294 FALSE FNO12_1160 unmapped TGGTAATTCAAGTGAGATTATGGGAATCATGCCAATGATTAAATACCTCGGTATACCAGT
16 96 134 CUST_377_PI429544294 CUST_377_PI429544294 FALSE FNO12_1824 unmapped TTCGCGTTGGATGTCACGTGTAAATTCTGAGCTACCCATCTATGCACTATCACGTAATTC
17 96 132 CUST_3233_PI429544192 CUST_3233_PI429544192 FALSE FNO12_1162 unmapped AGTTAAAGCTGGGATTACAGGATATGCTCAAGTTTTGAAAAGCTATGCAACTTTGCCGGA
18 96 130 CUST_160_PI429544294 CUST_160_PI429544294 FALSE FNO12_0628 unmapped TAGTTGGTCTTCAACCATTCCAAGCTCGTGAAGTAGCTTTCAAACTTGGTCTTGAAGGTA
19 96 128 CUST_2966_PI429544192 CUST_2966_PI429544192 FALSE FNO12_1063 unmapped TTGGCACGATTATGTTGATGGTATATTCTAATGAGGCTTATGCAGAATTATCTACTGCAA
20 96 126 CUST_4003_PI429544192 CUST_4003_PI429544192 FALSE FNO12_1453 unmapped ACTAGTCAAAGGCTTAGAGCCTGGTACTACCATTATCACATCAGGACAAAATAAAGTGCA

Total number of rows: 15744

Table truncated, full table size 2119 Kbytes.




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Supplementary file Size Download File type/resource
GPL26043_062611_D_GEO_20131203.txt.gz 531.9 Kb (ftp)(http) TXT

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