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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jan 17, 2019 |
Title |
Agilent-043020 Pengfei_CDRT4_Sep_7_2012 034305 |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Agilent Technologies |
Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
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Submission date |
Jan 16, 2019 |
Last update date |
Jan 17, 2019 |
Contact name |
Michelle C. Barton |
E-mail(s) |
mbarton@mdanderson.org
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Organization name |
The University of Texas MD Anderson Cancer Center
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Department |
Department of Epigenetics and Molecular Carcinogenesis,
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Street address |
6767 Bertner St. Unit Number: 1000 Room Number: S9.8116B
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City |
HOUSTON |
State/province |
TEXAS |
ZIP/Postal code |
77030 |
Country |
USA |
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Samples (71)
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GSM3565210, GSM3565211, GSM3565212, GSM3565213, GSM3565214, GSM3565215
GSM3565216, GSM3565217, GSM3565218, GSM3565219, GSM3565220, GSM3565221, GSM3565222, GSM3565223, GSM3565224, GSM3565225, GSM3565226, GSM3565227, GSM3565228, GSM3565229, GSM3565230, GSM3565231, GSM3565232, GSM3565233, GSM3565234, GSM3565235, GSM3565236, GSM3565237, GSM3565238, GSM3565239, GSM3565240, GSM3565241, GSM3565242, GSM3565243, GSM3565244, GSM3565245, GSM3565246, GSM3565247, GSM3565248, GSM3565249, GSM3565250, GSM3565251, GSM3565252, GSM3565253, GSM3565254, GSM3565255, GSM3565256, GSM3565257, GSM3565258, GSM3565259, GSM3565260, GSM3565261, GSM3565262, GSM3565263, GSM3565264, GSM3565265, GSM3565266, GSM3565267, GSM3565268, GSM3565269, GSM3565270, GSM3565271, GSM3565272, GSM3565273, GSM3565274, GSM3565275, GSM3565276, GSM3565277, GSM3565278, GSM3565279, GSM3565280
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Series (2) |
GSE125209 |
Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2 [III] |
GSE125210 |
Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2 |
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Data table header descriptions |
ID |
Agilent feature number |
COL |
Column |
ROW |
Row |
SPOT_ID |
Spot identifier |
CONTROL_TYPE |
Control type |
GB_ACC |
GenBank Accession number |
GENE_SYMBOL |
Gene Symbol |
GENE_NAME |
Gene Name |
ACCESSION_STRING |
Accession String |
CHROMOSOMAL_LOCATION |
Chromosomal Location |
CYTOBAND |
Cytoband |
SEQUENCE |
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Data table |
ID |
COL |
ROW |
SPOT_ID |
CONTROL_TYPE |
GB_ACC |
GENE_SYMBOL |
GENE_NAME |
ACCESSION_STRING |
CHROMOSOMAL_LOCATION |
CYTOBAND |
SEQUENCE |
1 |
192 |
328 |
HsCGHBrightCorner |
pos |
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NA |
2 |
192 |
326 |
DarkCorner |
pos |
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NA |
3 |
192 |
324 |
DarkCorner |
pos |
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NA |
4 |
192 |
322 |
A_16_P20599387 |
FALSE |
NM_004278 |
PIGL |
phosphatidylinositol glycan anchor biosynthesis, class L |
ref|NM_004278 |
chr17:16173623-16173682 |
hs|p11.2 |
ATCAGATGCCAGTCTCACTGTCATTCTCCAATCTTCCCACTATAACATATTTAGTTCATT |
5 |
192 |
320 |
A_16_P20652735 |
FALSE |
NM_004527 |
MEOX1 |
mesenchyme homeobox 1 |
ref|NM_004527|ref|NM_013999|ref|NM_001040002 |
chr17:41735167-41735226 |
hs|q21.31 |
CACCATCCCCATAAATATAGAAATATTTGTCAGACCTTATATTCTGAAGGCTGGTTCAGG |
6 |
192 |
318 |
A_16_P03217539 |
FALSE |
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chr17:13276421-13276480 |
hs|p12 |
CTTGATCTGCATCCAAACAAACATAAGGAAAGAGATGTTGCTCTTGACATTAACACTGAT |
7 |
192 |
316 |
A_18_P12596569 |
FALSE |
NM_153321 |
PMP22 |
peripheral myelin protein 22 |
ref|NM_153321|ref|NM_153322|ref|NM_000304 |
chr17:15162637-15162695 |
hs|p12 |
ATGGTAAGAGCCAACGTTTTATGACTTAAAAGCACCTTGTAAATGGAGAAGTTCCACAT |
8 |
192 |
314 |
A_18_P12633002 |
FALSE |
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chr17:33896935-33896994 |
hs|q12 |
AGAGCCAATATGAGGACTAAGGAATAATCTGGGTTGATTAGACTGTAAGATATGTTTGGG |
9 |
192 |
312 |
A_16_P57538480 |
FALSE |
NM_000723 |
CACNB1 |
calcium channel, voltage-dependent, beta 1 subunit |
ref|NM_000723|ref|NM_199247|ref|NM_199248 |
chr17:37339773-37339832 |
hs|q12 |
CAGACCATTTGCTAAGTGCTATACATTCATATGAGGTTGAAACACTTGACAATACGATGG |
10 |
192 |
310 |
A_16_P20619915 |
FALSE |
NM_033389 |
SSH2 |
slingshot homolog 2 (Drosophila) |
ref|NM_033389 |
chr17:28131161-28131220 |
hs|q11.2 |
AAACAAAGTCAGAGGATCCTGGAATACTTACAATTAAAATCAAAGTCACATCATGCTCCT |
11 |
192 |
308 |
A_16_P20616969 |
FALSE |
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ens|ENST00000531839|ens|ENST00000414744 |
chr17:26928797-26928856 |
hs|q11.2 |
GCTTTGACAACATTTCTACATTGAAGACTCTATCAAACAAGTAACCAATAAATTGAGATT |
12 |
192 |
306 |
A_16_P19372458 |
FALSE |
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ens|ENST00000528021|ens|ENST00000531744|ens|ENST00000532699|ens|ENST00000525987|ens|ENST00000534010 |
chr11:111973760-111973814 |
hs|q23.1 |
GGAGAAACCAAGCAGTATGAAACAGTCTTGACAAAACCAATGTCCTTCCTCTTAT |
13 |
192 |
304 |
A_16_P37494034 |
FALSE |
NM_001500 |
GMDS |
GDP-mannose 4,6-dehydratase |
ref|NM_001500 |
chr6:2186768-2186827 |
hs|p25.3 |
AGCCTTTCCATAATAAATTAAACATGCTAAAAGAACTTCATCTCTGTATTTGATGTCCCT |
14 |
192 |
302 |
A_16_P20666305 |
FALSE |
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chr17:47192741-47192800 |
hs|q21.32 |
AACTAGATCACATATCTGAGTGGTTGCTCAATTTATCTGATGTCACTTAACGAGGGTAAC |
15 |
192 |
300 |
A_16_P03224489 |
FALSE |
NM_018242 |
SLC47A1 |
solute carrier family 47, member 1 |
ref|NM_018242 |
chr17:19472330-19472389 |
hs|p11.2 |
CTTTGAAATATAAATCCATCTGTATCCCAAGTGCCGTCCTTGGCTCACCTATTCATTTAA |
16 |
192 |
298 |
A_16_P20596074 |
FALSE |
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chr17:14807657-14807716 |
hs|p12 |
TCATGGGATTGGATGTCTAAAATTTTTTCTCCATAAATACCTCCTCAATTCAGTGTGCAT |
17 |
192 |
296 |
A_16_P03193441 |
FALSE |
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chr16:85786147-85786195 |
hs|q24.1 |
CTAGGCTTCTGAGGAACTAAGATGGACAAGCCTAGGCGACTAAGAACTG |
18 |
192 |
294 |
A_16_P20719610 |
FALSE |
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chr17:69426240-69426299 |
hs|q24.3 |
AAAGCACAGTGATTTCCAAATTCTTTACTTTGTCAGACAAACCTTAAGTCAAAGGAATCC |
19 |
192 |
292 |
A_16_P15739984 |
FALSE |
NM_144563 |
RPIA |
ribose 5-phosphate isomerase A |
ref|NM_144563 |
chr2:89034397-89034456 |
hs|p11.2 |
ACTTTAAAAACTTAAGGCCAAATCAAAATAATACTGGGCTAGATTGTTAGGTCTGTGGGC |
20 |
192 |
290 |
A_16_P40759476 |
FALSE |
NM_006042 |
HS3ST3A1 |
heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 |
ref|NM_006042 |
chr17:13433243-13433302 |
hs|p12 |
CAGATGTTTAAGGAAAAAAAATGAGTTCTAGTGCTACAAATATTTGAAACCACAACAGCA |
Total number of rows: 62976
Table truncated, full table size 10074 Kbytes.
Supplementary data files not provided |
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