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Platform GPL26059 Query DataSets for GPL26059
Status Public on Jan 17, 2019
Title Agilent-043020 Pengfei_CDRT4_Sep_7_2012 034305
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Submission date Jan 16, 2019
Last update date Jan 17, 2019
Contact name Michelle C. Barton
E-mail(s) mbarton@mdanderson.org
Organization name The University of Texas MD Anderson Cancer Center
Department Department of Epigenetics and Molecular Carcinogenesis,
Street address 6767 Bertner St. Unit Number: 1000 Room Number: S9.8116B
City HOUSTON
State/province TEXAS
ZIP/Postal code 77030
Country USA
 
Samples (71) GSM3565210, GSM3565211, GSM3565212, GSM3565213, GSM3565214, GSM3565215 
Series (2)
GSE125209 Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2 [III]
GSE125210 Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
SEQUENCE

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND SEQUENCE
1 192 328 HsCGHBrightCorner pos NA
2 192 326 DarkCorner pos NA
3 192 324 DarkCorner pos NA
4 192 322 A_16_P20599387 FALSE NM_004278 PIGL phosphatidylinositol glycan anchor biosynthesis, class L ref|NM_004278 chr17:16173623-16173682 hs|p11.2 ATCAGATGCCAGTCTCACTGTCATTCTCCAATCTTCCCACTATAACATATTTAGTTCATT
5 192 320 A_16_P20652735 FALSE NM_004527 MEOX1 mesenchyme homeobox 1 ref|NM_004527|ref|NM_013999|ref|NM_001040002 chr17:41735167-41735226 hs|q21.31 CACCATCCCCATAAATATAGAAATATTTGTCAGACCTTATATTCTGAAGGCTGGTTCAGG
6 192 318 A_16_P03217539 FALSE chr17:13276421-13276480 hs|p12 CTTGATCTGCATCCAAACAAACATAAGGAAAGAGATGTTGCTCTTGACATTAACACTGAT
7 192 316 A_18_P12596569 FALSE NM_153321 PMP22 peripheral myelin protein 22 ref|NM_153321|ref|NM_153322|ref|NM_000304 chr17:15162637-15162695 hs|p12 ATGGTAAGAGCCAACGTTTTATGACTTAAAAGCACCTTGTAAATGGAGAAGTTCCACAT
8 192 314 A_18_P12633002 FALSE chr17:33896935-33896994 hs|q12 AGAGCCAATATGAGGACTAAGGAATAATCTGGGTTGATTAGACTGTAAGATATGTTTGGG
9 192 312 A_16_P57538480 FALSE NM_000723 CACNB1 calcium channel, voltage-dependent, beta 1 subunit ref|NM_000723|ref|NM_199247|ref|NM_199248 chr17:37339773-37339832 hs|q12 CAGACCATTTGCTAAGTGCTATACATTCATATGAGGTTGAAACACTTGACAATACGATGG
10 192 310 A_16_P20619915 FALSE NM_033389 SSH2 slingshot homolog 2 (Drosophila) ref|NM_033389 chr17:28131161-28131220 hs|q11.2 AAACAAAGTCAGAGGATCCTGGAATACTTACAATTAAAATCAAAGTCACATCATGCTCCT
11 192 308 A_16_P20616969 FALSE ens|ENST00000531839|ens|ENST00000414744 chr17:26928797-26928856 hs|q11.2 GCTTTGACAACATTTCTACATTGAAGACTCTATCAAACAAGTAACCAATAAATTGAGATT
12 192 306 A_16_P19372458 FALSE ens|ENST00000528021|ens|ENST00000531744|ens|ENST00000532699|ens|ENST00000525987|ens|ENST00000534010 chr11:111973760-111973814 hs|q23.1 GGAGAAACCAAGCAGTATGAAACAGTCTTGACAAAACCAATGTCCTTCCTCTTAT
13 192 304 A_16_P37494034 FALSE NM_001500 GMDS GDP-mannose 4,6-dehydratase ref|NM_001500 chr6:2186768-2186827 hs|p25.3 AGCCTTTCCATAATAAATTAAACATGCTAAAAGAACTTCATCTCTGTATTTGATGTCCCT
14 192 302 A_16_P20666305 FALSE chr17:47192741-47192800 hs|q21.32 AACTAGATCACATATCTGAGTGGTTGCTCAATTTATCTGATGTCACTTAACGAGGGTAAC
15 192 300 A_16_P03224489 FALSE NM_018242 SLC47A1 solute carrier family 47, member 1 ref|NM_018242 chr17:19472330-19472389 hs|p11.2 CTTTGAAATATAAATCCATCTGTATCCCAAGTGCCGTCCTTGGCTCACCTATTCATTTAA
16 192 298 A_16_P20596074 FALSE chr17:14807657-14807716 hs|p12 TCATGGGATTGGATGTCTAAAATTTTTTCTCCATAAATACCTCCTCAATTCAGTGTGCAT
17 192 296 A_16_P03193441 FALSE chr16:85786147-85786195 hs|q24.1 CTAGGCTTCTGAGGAACTAAGATGGACAAGCCTAGGCGACTAAGAACTG
18 192 294 A_16_P20719610 FALSE chr17:69426240-69426299 hs|q24.3 AAAGCACAGTGATTTCCAAATTCTTTACTTTGTCAGACAAACCTTAAGTCAAAGGAATCC
19 192 292 A_16_P15739984 FALSE NM_144563 RPIA ribose 5-phosphate isomerase A ref|NM_144563 chr2:89034397-89034456 hs|p11.2 ACTTTAAAAACTTAAGGCCAAATCAAAATAATACTGGGCTAGATTGTTAGGTCTGTGGGC
20 192 290 A_16_P40759476 FALSE NM_006042 HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 ref|NM_006042 chr17:13433243-13433302 hs|p12 CAGATGTTTAAGGAAAAAAAATGAGTTCTAGTGCTACAAATATTTGAAACCACAACAGCA

Total number of rows: 62976

Table truncated, full table size 10074 Kbytes.




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