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Platform GPL26089 Query DataSets for GPL26089
Status Public on Jul 31, 2019
Title Agilent-079414 Rhodococcus jostii RHA1_Gordonia sp. KTR9 plasmid pGKT2 8x15k GXP Array [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Rhodococcus jostii RHA1; Gordonia sp. KTR9
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Gene Expression array for Rhodococcus jostii RHA1 &Gordonia sp. KTR9 plasmid pGKT2 8x15k GXP Array

Arrays of this design have barcodes that begin with 16079414 or 2579414.

 
Submission date Jan 24, 2019
Last update date Jul 31, 2019
Contact name Karl Indest
E-mail(s) indestk@wes.army.mil
Organization name US Army Engineer Research and Development Center
Street address 3909 Halls Ferry Road
City Vicksburg
ZIP/Postal code 39180
Country USA
 
Samples (6) GSM3577040, GSM3577041, GSM3577042, GSM3577043, GSM3577044, GSM3577045
Series (2)
GSE125548 Enhanced plasmid mediated bioaugmentation of RDX contaminated matrices in column studies using donor strain Gordonia sp. KTR9 [exp1]
GSE125551 Enhanced plasmid mediated bioaugmentation of RDX contaminated matrices in column studies using donor strain Gordonia sp. KTR9

Data table header descriptions
ID Agilent Prbe Name
SPOT_ID
ORF ORF Name
DESCRIPTION
SEQUENCE

Data table
ID SPOT_ID ORF DESCRIPTION SEQUENCE
Gordonia_pGKT2_KTR9_RS00005_1 Gordonia_pGKT2_KTR9_RS00005_1 KTR9_RS00005 "Target ID:KTR9_RS00005, Product:phosphopantetheine--protein transferase, Location: 66..950 // Strand: +" ATCAACAGCAAGGGTGGAGTATTCAAGACGACCCTGGCGTCCAACATTG
Gordonia_pGKT2_KTR9_RS00015_2 Gordonia_pGKT2_KTR9_RS00015_2 KTR9_RS00015 "Target ID:KTR9_RS00015, Product:hypothetical protein, Location: 1707..2018 // Strand: -" CAAGTCCGATCTTTCCAGCGCTCGTTCGCTGACTGCCGACTCATG
Gordonia_pGKT2_KTR9_RS00020_3 Gordonia_pGKT2_KTR9_RS00020_3 KTR9_RS00020 "Target ID:KTR9_RS00020, Product:hypothetical protein, Location: 4485..4787 // Strand: -" CAAGTCCTTGATTTCGGGACGTTGACGCATGTTCATGCGCTCGGTGTGGGTCTTGATAC
Gordonia_pGKT2_KTR9_RS00025_4 Gordonia_pGKT2_KTR9_RS00025_4 KTR9_RS00025 "Target ID:KTR9_RS00025, Product:hypothetical protein, Location: 5115..5477 // Strand: +" CATCAATCGCAGGCCATCGTGATGCTGATTCGGATGTGGGTCAACGAGTTC
Gordonia_pGKT2_KTR9_RS00030_5 Gordonia_pGKT2_KTR9_RS00030_5 KTR9_RS00030 "Target ID:KTR9_RS00030, Product:hypothetical protein, Location: 5553..6935 // Strand: +" CATCAACAATTTCGTCACGCCGGTGACGGTGAGCATCGTGTTCGACAAC
Gordonia_pGKT2_KTR9_RS00035_6 Gordonia_pGKT2_KTR9_RS00035_6 KTR9_RS00035 "Target ID:KTR9_RS00035, Product:replicative DNA helicase, Location: 6978..7556 // Strand: +" CGTCTGTCATGAAGGACCTCACACCCGAGGACTTCTATCAACCCGTACAC
Gordonia_pGKT2_KTR9_RS00040_7 Gordonia_pGKT2_KTR9_RS00040_7 KTR9_RS00040 "Target ID:KTR9_RS00040, Product:hypothetical protein, Location: 8177..8410 // Strand: -" CTCAAGTGTGATGCCGCAGGCGATCTCGGTGTTGGTCAGTTCATG
Gordonia_pGKT2_KTR9_RS00045_8 Gordonia_pGKT2_KTR9_RS00045_8 KTR9_RS00045 "Target ID:KTR9_RS00045, Product:hypothetical protein, Location: 8419..8598 // Strand: -" GACTTGGAGAATGCGTCGATCTCGTCGCCGCCAATTGCTTTGCGTC
Gordonia_pGKT2_KTR9_RS00050_9 Gordonia_pGKT2_KTR9_RS00050_9 KTR9_RS00050 "Target ID:KTR9_RS00050, Product:hypothetical protein, Location: 9001..9180 // Strand: -" GGCACACAGGCATGAGGATTCCTTCGTTCGGAGTGACCTTCTTCTTCAC
Gordonia_pGKT2_KTR9_RS00055_10 Gordonia_pGKT2_KTR9_RS00055_10 KTR9_RS00055 "Target ID:KTR9_RS00055, Product:hypothetical protein, Location: 9264..9662 // Strand: -" GTCTCGTACCAGGGCAGTTCGATCAGGTGGTGTTTGTCGACATGAGG
Gordonia_pGKT2_KTR9_RS00060_11 Gordonia_pGKT2_KTR9_RS00060_11 KTR9_RS00060 "Target ID:KTR9_RS00060, Product:hypothetical protein, Location: 9710..9889 // Strand: -" GATCTCGTAGCCTTCGAGATCACCGATCTCGTCATCCCATGTCGAGGGATTTC
Gordonia_pGKT2_KTR9_RS00065_12 Gordonia_pGKT2_KTR9_RS00065_12 KTR9_RS00065 "Target ID:KTR9_RS00065, Product:hypothetical protein, Location: 10077..10544 // Strand: -" GAACTACGTTGTCGTTGAGGTTGCGCAGGTTGCGCAGCTCCGCGAGCAAATCTC
Gordonia_pGKT2_KTR9_RS00070_13 Gordonia_pGKT2_KTR9_RS00070_13 KTR9_RS00070 "Target ID:KTR9_RS00070, Product:hypothetical protein, Location: 10797..11339 // Strand: +" GAGATCACGGAGAGGGACAAGATCTTCTCTCTCAGTCTCAATACCGCCGAGATC
Gordonia_pGKT2_KTR9_RS00075_14 Gordonia_pGKT2_KTR9_RS00075_14 KTR9_RS00075 "Target ID:KTR9_RS00075, Product:hypothetical protein, Location: 11364..11570 // Strand: -" GCGGCGATCGCTGATTCCGCCAGCGGAATCGATGTTCTCGGTCAT
Gordonia_pGKT2_KTR9_RS00080_15 Gordonia_pGKT2_KTR9_RS00080_15 KTR9_RS00080 "Target ID:KTR9_RS00080, Product:hypothetical protein, Location: 11567..11893 // Strand: -" GTCGTACAACCGTAGCGTCCGGCGATCAGACCACTCCTCGAACAC
Gordonia_pGKT2_KTR9_RS00085_16 Gordonia_pGKT2_KTR9_RS00085_16 KTR9_RS00085 "Target ID:KTR9_RS00085, Product:hypothetical protein, Location: 12065..12637 // Strand: -" CGACGACACGAGTAGCCGCGATTGGTCTTTCCTGAAATAGCTCAGTTCG
Gordonia_pGKT2_KTR9_RS00090_17 Gordonia_pGKT2_KTR9_RS00090_17 KTR9_RS00090 "Target ID:KTR9_RS00090, Product:hypothetical protein, Location: 12634..12834 // Strand: -" GATGTATCGGATGTGAATGGTGGCCATGTAGTCGAATTCGCGCGTGC
Gordonia_pGKT2_KTR9_RS00095_18 Gordonia_pGKT2_KTR9_RS00095_18 KTR9_RS00095 "Target ID:KTR9_RS00095, Product:hypothetical protein, Location: 12886..13854 // Strand: -" GACGACGAAGACTCGATACTCGTAGGTTATCTCGATCCATGGACTGACGAGGAAAG
Gordonia_pGKT2_KTR9_RS00100_19 Gordonia_pGKT2_KTR9_RS00100_19 KTR9_RS00100 "Target ID:KTR9_RS00100, Product:Site-specific DNA methylase, Location: 14036..15031 // Strand: -" GACAGATTGGCGAGAATGTGTTCGGTGTCAGGATGATTCACCTGGTGTGTAG
Gordonia_pGKT2_KTR9_RS00105_20 Gordonia_pGKT2_KTR9_RS00105_20 KTR9_RS00105 "Target ID:KTR9_RS00105, Product:hypothetical protein, Location: 15421..15642 // Strand: -" GTAGTCTTGCCGGTACTTTCGCTCGAGACCTTCAGGGGTGACCCAGTGTTC

Total number of rows: 9293

Table truncated, full table size 2053 Kbytes.




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Supplementary file Size Download File type/resource
GPL26089_079414_D_GEO_20151102.txt.gz 914.7 Kb (ftp)(http) TXT

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