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Platform GPL26374 Query DataSets for GPL26374
Status Public on Dec 19, 2019
Title JC AMADID 084120
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol In situ oligosynthesized array with synthetic sequences containing the following classes of probes: (1) probes representing the predicted target site of all TALE proteins in this study as well as all mono- and di-nucleotide adjacent substitutions of these target sequences in constant flanking sequence, and (2) probes representing the predicted target sequences for an entirely different set of TALE proteins which are not relevant for this study and were not included in any of the experiments discussed here. AMADID 084120.
 
 
Submission date Apr 02, 2019
Last update date Apr 26, 2019
Contact name James Anderson
E-mail(s) jamesanderson12358@gmail.com
Organization name Brigham and Women's Hospital
Department Genetics
Lab Bulyk
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (46) GSM3702210, GSM3702211, GSM3702212, GSM3702213, GSM3702214, GSM3702215 
Series (1)
GSE129193 Context and number of non‐canonical repeat variable diresidues (RVDs) impede the design of TALE proteins with improved DNA targeting

Data table header descriptions
ID
SEQUENCE
SPOT_ID

Data table
ID SEQUENCE SPOT_ID
dBr_TALE2072_dinucleotide_substitution_99_replicate_9 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_8 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_7 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_6 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_5 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_4 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_3 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_2 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_10 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_99_replicate_1 TAGCAATGTTCACCAGGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_9 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_8 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_7 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_6 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_5 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_4 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_3 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_2 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_10 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG
dBr_TALE2072_dinucleotide_substitution_98_replicate_1 TAGCAATGTTCACCACGGTGGTGCCCATCATTGCTAGTCTGTGTTCCGTTGTCCGTGCTG

Total number of rows: 62976

Table truncated, full table size 6995 Kbytes.




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