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Platform GPL268 Query DataSets for GPL268
Status Public on Mar 11, 2003
Title ACF_SGF_CEA
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description A collection of 5760 full length cDNA clones from the human infant brain 1NIB library kindly gifted by Genethon as bacterial colonies in 96-well microtitre plates. These clones were characterized by 5' and 3' sequencing. Plasmids containing clones were grown in Escherichia coli by standard microbiological methods. Each insert was PCR amplified (30 cycles) by sampling 1 µl of cell culture with vector primers. To obtain a sufficient amount of probes, a second run of PCR, consisting of 20 cycles, was performed using the same set of primers. PCR products ranged from 600 to 4000 bp in length.
The PCR products were prepared in 96-well plates, purified by ethanol precipitation, washed in 70% ethanol, dried, dissolved in TE/DMSO (50/50) and stored at -80°C. PCR products were arrayed on amino-silane coated glass slide (Corning CMT-GAPS II) using a MicroGrid-II Micro-arrayer (BioRobotics, Cambridge, UK).
Keywords = cDNA array, PCR products
 
Contributor(s) Soularue P, Pitaval A, Petat C, Alibert O, Lemoine S, Gidrol X
Submission date Mar 11, 2003
Last update date Apr 09, 2008
Contact name Jerome Lamartine
E-mail(s) lamartin@dsvidf.cea.fr
Phone 33 1 60 87 34 84
Fax 33 1 60 87 34 98
Organization name CEA
Department Departement de Radiobiologie et Radiopathologie
Lab Service de Genomique Fonctionnelle
Street address 2 rue Gaston Cremieux
City Evry
ZIP/Postal code F91057
Country France
 
Samples (4) GSM4690, GSM4691, GSM4692, GSM4693
Series (1)
GSE338 cDNA array 6800 genes (NIB) - HaCaT J10 3h - 0.5&2 Gy

Data table header descriptions
ID
CLONE_ID Clone Identifier
BLOCK Block number within array
ROW Row number within block
COLUMN Column number within block
GENENAME Gene symbol
GB_LIST GenBank accession numbers
SPECIES NCBI species code
UNIGENE UniGene cluster identifier
GENE Entrez GENE ID
CHR Chromosome number
CYTOBAND Cytogenetic band

Data table
ID CLONE_ID BLOCK ROW COLUMN GENENAME GB_LIST SPECIES UNIGENE GENE CHR CYTOBAND
1.1.1 c-01a01 1 1 1
1.1.2 c-01c01 1 1 2 Z38153 9606 380788
1.1.3 c-01e01 1 1 3 9606
1.1.4 c-01g01 1 1 4 9606
1.1.5 c-06a01 1 1 5 Z38309, Z42020 9606 7177
1.1.6 c-06c01 1 1 6 9606
1.1.7 c-06e01 1 1 7 CDK5R1 Z42034 9606 93597 8851 17 17q11.2
1.1.8 c-06g01 1 1 8 Z42043, Z38332 9606 4257
1.1.9 c-0da01 1 1 9 CDH8 Z38479, Z42238 9606 79133 1006 16 16q22.1
1.1.10 c-0dc01 1 1 10 KIAA0218 Z42247, F01772 9606 75863 9797 3 3p25.3
1.1.11 c-0de01 1 1 11
1.1.12 c-0dg01 1 1 12 9606
1.1.13 c-0ja01 1 1 13 SRGAP1 F01941 9606 18995 57522 12 12q14.1
1.1.14 c-0jc01 1 1 14 BTG2 F08635, F01947 9606 75462 7832 1 1q32
1.1.15 c-0je01 1 1 15 XAP135 Z38644, F08636 9606 7759 55274 6 6q27
1.1.16 c-0jg01 1 1 16 9606
1.1.17 c-0oa01 1 1 17 LNPEP Z42573, Z38752 9606 166733 4012 5 5q15
1.1.18 c-0oc01 1 1 18 CEBPG F05841, Z38758 9606 2227 1054 19 19q13.11
1.1.19 c-0oe01 1 1 19 RALB F02096, F05853 9606 348024 5899 2 2cen-q13
1.1.20 c-0og01 1 1 20 9606

Total number of rows: 4800

Table truncated, full table size 258 Kbytes.




Download family Format
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Supplementary data files not provided

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