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Platform GPL27404 Query DataSets for GPL27404
Status Public on Sep 01, 2019
Title Agilent-028266 Oryza sativa
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryza sativa
Manufacturer Agilent
Manufacture protocol Agilent
 
 
Submission date Aug 30, 2019
Last update date Sep 01, 2019
Contact name Barbara Reinhold-Hurek
E-mail(s) breinhold@uni-bremen.de
Organization name University of Bremen
Department Microbe-Plant Interactions
Lab Microbe-Plant Interactions
Street address Leobener Str. 5
City Bremen
State/province Bremen
ZIP/Postal code 28359
Country Germany
 
Samples (8) GSM4055701, GSM4055702, GSM4055703, GSM4055704, GSM4055705, GSM4055706 
Series (2)
GSE136706 Rice roots: Non-colonized (sterile) control vs. infected with Xanthomonas oryzae pv. oryzae strain PXO99 (Xan)
GSE136707 Rice roots: Non-colonized (sterile) control vs. colonized with Azoarcus olearius BH72

Data table header descriptions
ID
accessions
chr_coord
SubTypeName
SEQUENCE
ControlType
GeneName
SPOT_ID
Description

Data table
ID accessions chr_coord SubTypeName SEQUENCE ControlType GeneName SPOT_ID Description
Os01g0100100|COMBINER_EST|CI448596|0 rapdb|Os01t0100100-01|ta|TA52462_4530|ta|CB671732|tc|TC425842 os|chr1:9719-9778 TGGAGAGAGAAGGAATGAATGAGGAATGTGTATAAAGCACTAGTGGTAATCACGCAGTCG 0 Os01t0100100-01 Os01t0100100-01 rapdb|RabGAP/TBC domain containing protein. [Os01t0100100-01]
Os01g0100200|mRNA|AK059894|CDS+3'UTR rapdb|Os01t0100200-01|gb|AK059894|ta|CI427584|tc|TC435494 os|chr1:11364-11423 TGTCTGGTGTCCGAAGAAGAATATATGTAAATGACATTACCATAATAAATGTTGAATGCT 0 Os01t0100200-01 Os01t0100200-01 rapdb|Conserved hypothetical protein. [Os01t0100200-01]
Os01g0100400|mRNA|AK101455|CDS+3'UTR rapdb|Os01t0100400-01|gb|AK101455|ta|TA58334_4530|tc|TC406985 os|chr1:14608-14667 TGTGTGATATCTGAAGATCAACTTACTACCCAAACCTAGACTCACAGAAACCAATTGATT 0 Os01t0100400-01 Os01t0100400-01 rapdb|Similar to Pectinesterase-like protein. [Os01t0100400-01]
Os01g0100500|mRNA|AK067316|CDS+3'UTR rapdb|Os01t0100500-01|gb|AK067316|ta|TA49723_4530|ta|TA49722_4530 os|chr1:19068-19127 ATCGTGTAAATCTTCGTGTTGGTGTGATTCGCCGACCGTTTTCTAGCCGGCTGATTATAT 0 Os01t0100500-01 Os01t0100500-01 rapdb|Immunoglobulin-like domain containing protein. [Os01t0100500-01]
Os01g0100600|mRNA|AK121362|CDS+3'UTR rapdb|Os01t0100600-01|gb|AK121362|ta|TA59622_4530|ta|CI028440 os|chr1:25797-25856 AGTTGTAGAGGAATATGCTGATCCTTAGAAAGAACTTTGTGTAGCCTATTTGGATGGTTT 0 Os01t0100600-01 Os01t0100600-01 rapdb|Single-stranded nucleic acid binding R3H domain containing protein. [Os01t0100600-01]
Os01g0100700|mRNA|AK059844|CDS+3'UTR rapdb|Os01t0100700-01|gb|AK288178|gb|CT833926|ta|TA36460_4530 os|chr1:27540-27599 GAAAATGTAGTAGTCTGTTCGCTATCGACATTGTTTTATTACACCCCCAATCCTTGTTCC 0 Os01t0100700-01 Os01t0100700-01 rapdb|Similar to 40S ribosomal protein S5-1. [Os01t0100700-01]
Os01g0100700|mRNA|AK121523|CDS+3'UTR rapdb|Os01t0100700-01|ta|CI052473|tc|TC445091 os|chr1:27585-27644 CCCAATCCTTGTTCCTGCATGATCTGAGTTCTTTATGTGTGATTGACTGATGATTGGTTC 0 Os01t0100700-01 Os01t0100700-01 rapdb|Similar to 40S ribosomal protein S5-1. [Os01t0100700-01]
Os01g0100800|mRNA|AK122012|CDS+3'UTR rapdb|Os01t0100800-01|gb|AK122012|ta|TA58398_4530|tc|TC415385 os|chr1:33362-33421 AAAGAGACACCTGATTGCGTCTTGTTGCAGCAAGTTTGTTTGGGGAGGATGTACTGGAAT 0 Os01t0100800-01 Os01t0100800-01 rapdb|Protein of unknown function DUF1664 family protein. [Os01t0100800-01]
Os01g0100900|COMBINER_EST|CI015509|0 rapdb|Os01t0100900-01|gb|EU152208|ta|TA39541_4530|ta|TA39542_4530 os|chr1:40036-40095 TTGTGGCATTGCTGATTACTGTTGTACTAGTATTATCATCATGTTCATGTACTCACCATA 0 Os01t0100900-01 Os01t0100900-01 rapdb|Pyridoxal phosphate-dependent decarboxylase domain containing protein. [Os01t0100900-01]
Os01g0101200|mRNA|AK067866|CDS+3'UTR rapdb|Os01t0101200-01 os|chr1:62512-62571 CCATCCAAACCTGGAACAACAATTTCAGATGCATATACTACTACTTTACATTTGTTCCTT 0 Os01t0101200-01 Os01t0101200-01 "rapdb|2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01]"
Os01g0101200|mRNA|AK104517|CDS+3'UTR rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 os|chr1:62456-62515 GGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTCCAT 0 Os01t0101200-01 Os01t0101200-01 "rapdb|2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01]"
Os01g0101200|mRNA|AK104625|CDS+3'UTR rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 os|chr1:62453-62512 CTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTC 0 Os01t0101200-01 Os01t0101200-01 "rapdb|2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01]"
Os01g0101200|mRNA|AK104752|CDS+3'UTR rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 os|chr1:62453-62512 CTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTC 0 Os01t0101200-01 Os01t0101200-01 "rapdb|2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01]"
Os01g0101200|mRNA|AK119457|CDS+3'UTR rapdb|Os01t0101200-02|gb|NM_001048276 os|chr1:64451-64510 GTTGAGGCCGATCCTTTGTTGAAACTTGTAGTAGTAGTAGTATACTACATACAGTTTAAT 0 Os01t0101200-02 Os01t0101200-02 "rapdb|2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-02]"
Os01g0101300|COMBINER_EST|CI016681|6 rapdb|Os01t0101300-01|gb|AK287446|ta|TA47708_4530|ta|TA47709_4530 os|chr1:62540-62481 TCTGAAATTGTTGTTCCAGGTTTGGATGGAATGGGAGCATGATAGTATTAGCTTGATTGG 0 Os01t0101300-01 Os01t0101300-01 rapdb|Conserved hypothetical protein. [Os01t0101300-01]
Os01g0101600|mRNA|AK099952|CDS+3'UTR rapdb|Os01t0101600-01|gb|AK099952|ta|TA49501_4530|ta|CI424780 os|chr1:77269-77328 TGGGGTTGTGCTTCTGTGGATGTAATACACTCGTCCACTGTATTGGGTTATTGTTAGAAT 0 Os01t0101600-01 Os01t0101600-01 rapdb|Immunoglobulin-like fold domain containing protein. [Os01t0101600-01]
Os01g0101600|mRNA|AK103820|CDS+3'UTR rapdb|Os01t0101600-02|rapdb|Os01t0101600-03|gb|CI338411|ta|TA49500_4530 os|chr1:76283-76342 TAGTACTGTGAGGTCAAACCAACCATATATTTGTCGTTGCAGGCTTGTGGTTCCATGAAG 0 Os01t0101600-02 Os01t0101600-02 rapdb|Immunoglobulin-like fold domain containing protein. [Os01t0101600-02]
Os01g0101600|mRNA|AK122118|CDS+3'UTR rapdb|Os01t0101600-02|rapdb|Os01t0101600-03|gb|CI338411|ta|TA49500_4530 os|chr1:76283-76342 TAGTACTGTGAGGTCAAACCAACCATATATTTGTCGTTGCAGGCTTGTGGTTCCATGAAG 0 Os01t0101600-02 Os01t0101600-02 rapdb|Immunoglobulin-like fold domain containing protein. [Os01t0101600-02]
Os01g0101700|COMBINER_EST|CI525185|3 gb|NM_001048279|ta|TA64444_4530|ta|CI016518|tc|TC432183 os|chr1:83104-83163 ATGGGGGTATTTGTGTCAGTATACTGTATACCCAACCCAAGCTATGAATGAACGATGAAG 0 NM_001048279 NM_001048279 "gb|Oryza sativa Japonica Group Os01g0101700 (Os01g0101700) mRNA, complete cds [NM_001048279]"
Os01g0101800|mRNA|AK103498|CDS+3'UTR rapdb|Os01t0101800-01|gb|AK103498|ta|TA65231_4530|ta|CR287701 os|chr1:87701-87760 AGGAACAGCATGTCATGTGCATCCTTTGTTTGACAGAAAATGGAAGGACCATGTGCGTGG 0 Os01t0101800-01 Os01t0101800-01 rapdb|Conserved hypothetical protein. [Os01t0101800-01]

Total number of rows: 42996

Table truncated, full table size 11791 Kbytes.




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