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Platform GPL27470 Query DataSets for GPL27470
Status Public on Aug 18, 2021
Title Microarrays of yeast nuclearly encoded tRNAs
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
Manufacturer Fraunhofer Institute for Biomedical Research (Potsdam, Germany)
Manufacture protocol 1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.
 
 
Contributor(s) Polte C, Collart M, Ignatova Z
Submission date Sep 17, 2019
Last update date Aug 30, 2020
Contact name Zoya Ignatova
E-mail(s) zoya.ignatova@chemie.uni-hamburg.de
Organization name Universitaet Hamburg
Street address Martin -Luther-King-Platz 6
City Hamburg
ZIP/Postal code 20146
Country Germany
 
Samples (10) GSM4081793, GSM4081794, GSM4081795, GSM4081796, GSM4081797, GSM4081798 
Series (1)
GSE137567 Not4 and Not5 modulate translation elongation by Rps7A ubiquitination, Rli1 moonlighting, and condensates that exclude eIF5A

Data table header descriptions
ID
Anticodon Identity of detected tRNAs based on their anticodons and amino acid they bear
Codon Codons read by the detected tRNAs
SEQUENCE Full length probe sequences (5' to 3') listed in the first sheet of the file; K=G/T, M=A/C, R=G/A, S=G/C, W=A/T, Y=T/C, B=G/T/C, D=G/A/T, H=A/T/C, V=G/A/C, N=G/A/T/C

Data table
ID Anticodon Codon SEQUENCE
E.c. Tyr-2 E. coli Tyr-tRNA TGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACC
His1h Human His-tRNA TGCCGTGACTCGGATTCGAACCGAGGTTGCTGCGGCCACAACGCAGAGTACTAACCACTATACGATCACGGC
E.c. Lys-2 E. coli Lys-tRNA TGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC
Ser3h Human Ser-tRNA GACGAGGRTGGGATTCGAACCCACGYGTGCAGAGCACAATGGATTAGCAGTCCATCGCCTTAACCACTCGGCCACCTCGT
Arg1y Arg-ICG Arg-CGT/A/C CTTCCCCGCCAGGACTTGAACCTGGAaTCTTCTGGTTCGTAGCCAGACGCCGTgACCATTGGGCCACGAGGAA
Arg2y Arg-CCG Arg-CGG AGCTCCTCCCGGGACTCGAACCCGGAtCACAGCCACCGGAAGAATGCATGCTaACCATTGCACTAGAGGAGC
Arg3y Arg-CCU Arg-AGG CGTTCCGTACGGGACTCGAACCCGCAgTCTTCTCCTTAGGAGGGAGACGCGTTACCATTACGCCAACGGAAC
Arg4y Arg-UCU Arg-AGA/G CACTCACGATGGGGGTCGAACCCATAaTCTTCTGATTAGAAGTCAGACGCGTTGCCATTACGCCACGCGAGC
His1y His-GUG His-CAC/T TGCCATCTCCTAGAATCGAACCAGGGtTTCATCGGCCACAACGATGTGTACTaACCACTATACTAAGATGGC
Lys1y Lys-CUU Lys-AAG AGCCCTGTAGGGGGCTCGAACCCCTAaCCTTATGATTAAGAGTCATACGCGCTACCGATTGCGCCAACAAGGC
Lys2y Lys-UUU Lys-AAA CTCCTCATAGGGGGCTCGAACCCCTGaCATTTCGGTTAAAAGCCGAACGCTCTACCAACTGAGCTAACAAGGA
Asp1y Asp-GUC Asp-GAC/T CTCCGCGACGGGGAATTGAACCCCGAtCTGGCACGCGACAAGCGCCCATTCTgACCATTAAACTATCACGGA
Asp2y Asp-GUC2 Asp-GAC/T CTCCGCGACGGGGAATTGAACCCCGAtCTGGCACGCGACAAGCGCCCATTCTgACCATTAAACTtGTtGGA
Glu1y Glu-UUC Glu-GAA/G CTCCGATACGGGGAGTCGAACCCCGGtCTCCACGGTGAAAGCGTGATGTGATaGCCGTTACACTATATCGGA
Asn1y Asn-GUU Asn-AAC/T CGACCCCAGTGAGGGTTGAACTCACGaTCTTGCGATTAACAGTCGCACGCCTTaACCAACTTGGCCATGGAGTC
Cys1y Cys-GCA Cys-TGC/T AGCTCGCACTCAGGATCGAACTAAGGaCCAACAGATTTGCAATCTGCTGCGCTACCACTGCGCCATACGAGC
Gln1y Gln-UUG Gln-CAA/G AGGTCCTACCCGGATTCGAACCGGGGtTGTCCGGATCAAAACCGAAAGTGATaACCACTACACTATAGGACC
Ser1y Ser-IGA Ser-TCT/C CGACAACTGCAGGACTCGAACCTGCGCGGGCAAAGCCCAAAAGATTTCTAATCTTTCGCCTTaACCACTCGGCCAAGTTGCC
Ser2y Ser-C/UGA Ser-TCA/G CGACACCAGCAGGATTTGAACCAGCGCGGGCAGAGCCCAACAGATTTCAAGTCTGTCGCCTTaACCACTCGGCCATAGTGCC
Ser3y Ser-GCU Ser-AGC/T CGTCACAGACAGGATTCGAACCTGCGCAGGTAAAACCCAATGCCTTAGCAGGGCATCGCCTTaACCACTCGGCCACTGGGAC

Total number of rows: 68

Table truncated, full table size 6 Kbytes.




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Supplementary data files not provided

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