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Platform GPL27556 Query DataSets for GPL27556
Status Public on Jan 19, 2022
Title Agilent-034879 ADchip_1.0 033934 (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034879 or 2534879.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

In 034879_D_GEO_20111025.txt, the ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 01, 2019
Last update date Jan 19, 2022
Contact name Kristin Reiche
E-mail(s) kristin.reiche@izi.fraunhofer.de
Organization name Fraunhofer Institute for Cell Therapy and Immunology
Department Diagnostics
Street address Perlickstr. 1
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Samples (36) GSM4103849, GSM4103850, GSM4103851, GSM4103852, GSM4103853, GSM4103854 
Series (2)
GSE138260 Differential expression analysis of human brain samples with Alzheimer disease versus healthy control samples
GSE138261 Alzheimer-related genes show accelerated evolution

Data table header descriptions
ID Agilent Probe name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
ACUST_109502_PI426217857 ACUST_109502_PI426217857 FALSE unmapped TAAGCAGAGATTGACAGAGATAAGCTTCTAAGACCTTTCAGGCCCCAGAGTGTGACTGTT
ACUST_137079_PI426217852 ACUST_137079_PI426217852 FALSE unmapped AGATCTTCTGCCAGAGCCCTTGGGCTTCCACATCTCATCAGCCTGGGCTCTGAGGCCCCA
ACUST_23063_PI426217863 ACUST_23063_PI426217863 FALSE unmapped CAAGATTTAAGTACCAAGGTACTTAATGTGCCCAGTTTTGTGTCTGAATTAACAGATCTT
ACUST_2779_PI426418814 ACUST_2779_PI426418814 FALSE unmapped CGTGGTTCCCGGTGGTTGCGCTCCCCGTTTCGTCCCCTCCGTGAGCATCGGCGCTTACCG
ACUST_1296_PI426217872 ACUST_1296_PI426217872 FALSE unmapped GGGAAAGTCTGACTTTCTCTTGTAACCCAGAGCTGGATCTAAGCATTTCTATCATCCCCA
ACUST_232101_PI426226247 ACUST_232101_PI426226247 FALSE unmapped CTGCCGCAACAGAAATTGTTTTTATTTCATGTAAAATAAGGGATCAATTTCAAACCCTGC
ACUST_64165_PI426217857 ACUST_64165_PI426217857 FALSE unmapped TGGCGGCCCTCCTGGGCAGCTGGGCACATGTAGGCTCTCCCTGAGTAACCTGGGCTCTGC
ACUST_51793_PI426217869 ACUST_51793_PI426217869 FALSE unmapped AGGATCCTCACAGCCACATACCCCCAAATGTTCCCATAATCCTCTCTGCTTCTACTTACA
ACUST_120459_PI426217852 ACUST_120459_PI426217852 FALSE unmapped AATGCAAGCCATAGTAATTGGCTTTGCCCTCAGACAGCTGAGTCAGCATGAAATCTAGCA
ACUST_46156_PI426217852 ACUST_46156_PI426217852 FALSE unmapped TTGATGAGAAAAATCTGACAGTTCTCAGCCCCAAGCAAGAGAAACCTGGGTTTGGTCATG
ACUST_8858_PI426226230 ACUST_8858_PI426226230 FALSE unmapped CAGTGACGAAGAAGAAATGAAAGTATTGCTAGGAAGCTTGATGGACTCTTCTAGAGAAAA
ACUST_2822_PI426418836 ACUST_2822_PI426418836 FALSE unmapped TGAACGCAGCGTGGTGAGTGCGTCACTGCCTGCGCCACCGCCTTCTTTCCCTCTTTCCTT
ACUST_2068_PI426418814 ACUST_2068_PI426418814 FALSE unmapped CTTGATTTATAAAGAAAATAAAAGTTATTTTCTAAATGGTTTGATTTCCAAGGAACAGGG
ACUST_100572_PI426217852 ACUST_100572_PI426217852 FALSE unmapped TGTCAGGGATGAGCCACTTGAAGACCTCACTGCTCCTCAGACGGATGGCGGCCCAGTCCT
ACUST_36561_PI426226233 ACUST_36561_PI426226233 FALSE unmapped GCGAGCCCGAGCCCTCAAGGCCGGAGACCCGGCGGCAGCGCGGCCTCAACTTTCCCAGCC
ACUST_38214_PI426217869 ACUST_38214_PI426217869 FALSE unmapped GAGACTTGTTATCAAGTCTGTTATAAAACAGGTTGTAGAAACCTTTCAGGCTGAAATCTG
ACUST_135130_PI426217852 ACUST_135130_PI426217852 FALSE unmapped ACTGTAGGGGAGGAGAAAGCATTTGTTGTGCAGCCACTTAAAATGTATCTTGCCTGCAGA
ACUST_1456_PI426368334 ACUST_1456_PI426368334 FALSE unmapped TGACATTGAGATGGATGAAGCCATTTGTTGGCATTATCAGAACCAGCTGTGTGCTTGGCT

Total number of rows: 947673

Table truncated, full table size 142203 Kbytes.




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Supplementary file Size Download File type/resource
GPL27556_034879_D_GEO_20111025.txt.gz 46.2 Mb (ftp)(http) TXT

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