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Status
Public on Oct 09, 2019
Title
Agilent-024241 Xq22_44K Tiling array (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
We designed a tiling-path oligonucleotide microarray spanning 15.5 Mb involving the PLP1 region on Xq22. The custom 4x44k Agilent Technologies microarray was designed using the Agilent earray website. We selected 44,000 probes covering chrX: 98,028,855-113,513,744 (NCBI build 37), including the PLP1 gene, which represents an average distribution of 1 probe per 386 bp. Each patient sample was run once using this array; hybridization was done using a gender-matched reference sample.
Submission date
Oct 07, 2019
Last update date
Oct 09, 2019
Contact name
Vahid Bahrambeigi
E-mail(s)
vahid.bahrambeigi@uth.tmc.edu Phone
8327988479
Organization name
Baylor College Of Medicine
Department
Human Molecular Genetics
Lab
James R. Lupski
Street address
1 Baylor Plaza
City
Houston
State/province
Texas
ZIP/Postal code
77030
Country
USA
Samples (50)
GSM4112757 , GSM4112758 , GSM4112759 , GSM4112760 , GSM4112761 , GSM4112762
GSM4112763 ,
GSM4112764 ,
GSM4112765 ,
GSM4112766 ,
GSM4112767 ,
GSM4112768 ,
GSM4112769 ,
GSM4112770 ,
GSM4112771 ,
GSM4112772 ,
GSM4112773 ,
GSM4112774 ,
GSM4112775 ,
GSM4112776 ,
GSM4112777 ,
GSM4112778 ,
GSM4112779 ,
GSM4112780 ,
GSM4112781 ,
GSM4112782 ,
GSM4112783 ,
GSM4112784 ,
GSM4112785 ,
GSM4112786 ,
GSM4112787 ,
GSM4112788 ,
GSM4112789 ,
GSM4112790 ,
GSM4112791 ,
GSM4112792 ,
GSM4112793 ,
GSM4112794 ,
GSM4112795 ,
GSM4112796 ,
GSM4112797 ,
GSM4112798 ,
GSM4112799 ,
GSM4112800 ,
GSM4112801 ,
GSM4112802 ,
GSM4112803 ,
GSM4112804 ,
GSM4112805 ,
GSM4112806 Series (1)
GSE138542 High-resolution custom array spanning Xq22 region to study patients carrying PLP1 copy number gain
Data table header descriptions ID CHROMOSOME RANGE_GB RANGE_START STOP Feature Numbers
Data table ID CHROMOSOME RANGE_GB RANGE_START STOP Feature Numbers A_14_P109668
chrX
NC_000023.10
13632404
13632463
*7237,14310,22972,33475,37043
A_14_P106297
chrX
NC_000023.10
47394000
47394059
*6698,14350,20245,22898,35374
A_14_P102688
chrX
NC_000023.10
67978565
67978624
*3548,5113,24316,33406,38972
A_14_P132447
chrX
NC_000023.10
68298949
68299008
*7821,11062,12127,15135,16275
A_14_P139763
chrX
NC_000023.10
76923796
76923855
*8284,10149,19717,24632,32674
A_16_P21530325
chrX
NC_000023.10
97900097
97900156
31841
A_16_P21530326
chrX
NC_000023.10
97900434
97900493
18110
A_16_P41738028
chrX
NC_000023.10
97900661
97900720
31279
A_16_P21530328
chrX
NC_000023.10
97900875
97900934
29782
A_16_P41738030
chrX
NC_000023.10
97901250
97901309
11842
A_16_P41738031
chrX
NC_000023.10
97901435
97901494
33208
A_18_P17239770
chrX
NC_000023.10
97901658
97901717
41562
A_16_P60317446
chrX
NC_000023.10
97902638
97902697
14410
A_16_P21530333
chrX
NC_000023.10
97902778
97902837
33716
A_18_P17238486
chrX
NC_000023.10
97903037
97903096
30741
A_16_P60317447
chrX
NC_000023.10
97903374
97903433
22265
A_16_P60317448
chrX
NC_000023.10
97905592
97905651
20083
A_16_P60317449
chrX
NC_000023.10
97905958
97906017
28569
A_16_P60317451
chrX
NC_000023.10
97906613
97906672
26687
A_16_P60317454
chrX
NC_000023.10
97906997
97907056
8411
39956 2282 Kbytes .Supplementary file Size Download File type/resource GPL27580_Xq22_44K_024241_D_GEO_20091105.txt.gz
1.2 Mb
(ftp) (http) TXT
GPL27580_Xq22_44K_024241_D_GeneList_20091105.txt.gz
586.2 Kb
(ftp) (http) TXT
GPL27580_Xq22_44K_024241_D_SequenceList_20091105.txt.gz
897.0 Kb
(ftp) (http) TXT
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