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Platform GPL27934 Query DataSets for GPL27934
Status Public on Jan 01, 2020
Title Croce Human tsRNA microarray
Technology type other
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Carlo M. Croce laboratory, OSUMC
Manufacture protocol Carlo M. Croce laboratory, OSUMC
 
 
Submission date Dec 19, 2019
Last update date Jan 01, 2020
Contact name Nicholas H Farina
E-mail(s) Nicholas.Farina@med.uvm.edu
Phone 8026564878
Organization name University of Vermont Cancer Center
Department Biochemistry
Street address 89 Beaumont Avenue
City Burlington
State/province VT
ZIP/Postal code 05405
Country USA
 
Samples (30) GSM4226516, GSM4226517, GSM4226518, GSM4226519, GSM4226520, GSM4226521 
Series (1)
GSE142382 tsRNA microarray of parental normal-like and breast cancer cell lines and with inhibited or induced RUNX1 expression

Data table header descriptions
ID Name of sequence
Block Block location of spot in array
Row Row location of spot in array
Column Column location of spot in array
PROBE ID
Name Sequence recognized by probe
Status Type of sequence
Common name Name of probed RNA
SPOT_ID

Data table
ID Block Row Column PROBE ID Name Status Common name SPOT_ID
1 1 1 1 [10/13]tRNA44-PseudoGTC_chr1_16149300 [AmC6]GTCACGGGAAATTGTGTGAGGATTT tsRNA ts-110 ts-110
2 1 1 2 [10/13]tRNA44-PseudoGTC_chr1_16149300 [AmC6]GTCACGGGAAATTGTGTGAGGATTT tsRNA ts-110 ts-110
3 1 1 3 [10/13]tRNA44-PseudoGTC_chr1_16149300 [AmC6]GTCACGGGAAATTGTGTGAGGATTT tsRNA ts-110 ts-110
4 1 1 4 [10/15]tRNA51-PseudoCTT_chr1_16556622 [AmC6]GGCGCTGTGTTTCCCAGCATTTTGGGA tsRNA ts-4 ts-4
5 1 1 5 [10/15]tRNA51-PseudoCTT_chr1_16556622 [AmC6]GGCGCTGTGTTTCCCAGCATTTTGGGA tsRNA ts-4 ts-4
6 1 1 6 [10/15]tRNA51-PseudoCTT_chr1_16556622 [AmC6]GGCGCTGTGTTTCCCAGCATTTTGGGA tsRNA ts-4 ts-4
7 1 1 7 [10/17]tRNA56-ThrTGT_chr1_222638420 [AmC6]GCCTCCTGTTGGCTTACTTTTATTT tsRNA ts-6 ts-6
8 1 1 8 [10/17]tRNA56-ThrTGT_chr1_222638420 [AmC6]GCCTCCTGTTGGCTTACTTTTATTT tsRNA ts-6 ts-6
9 1 1 9 [10/17]tRNA56-ThrTGT_chr1_222638420 [AmC6]GCCTCCTGTTGGCTTACTTTTATTT tsRNA ts-6 ts-6
10 1 1 10 [10/19]tRNA12-PseudoGCA_chr3_17741342 [AmC6]GGATTTTCTCACTTCCATTTTAAAG tsRNA ts-99 ts-99
11 1 1 11 [10/19]tRNA12-PseudoGCA_chr3_17741342 [AmC6]GGATTTTCTCACTTCCATTTTAAAG tsRNA ts-99 ts-99
12 1 1 12 [10/19]tRNA12-PseudoGCA_chr3_17741342 [AmC6]GGATTTTCTCACTTCCATTTTAAAG tsRNA ts-99 ts-99
13 1 2 1 [10/21]tRNA4-GlnTTG_chr4_40908693 [AmC6]GTCAAAATGTTTCCAATGTTTTGTAT tsRNA ts-59 ts-59
14 1 2 2 [10/21]tRNA4-GlnTTG_chr4_40908693 [AmC6]GTCAAAATGTTTCCAATGTTTTGTAT tsRNA ts-59 ts-59
15 1 2 3 [10/21]tRNA4-GlnTTG_chr4_40908693 [AmC6]GTCAAAATGTTTCCAATGTTTTGTAT tsRNA ts-59 ts-59
16 1 2 4 [10/23]tRNA23-PseudoTTG_chr5_77318726 [AmC6]GTTACTAGCTGTGTGACCTTGGGCATATTGTTCAACTTCTTT tsRNA ts-108 ts-108
17 1 2 5 [10/23]tRNA23-PseudoTTG_chr5_77318726 [AmC6]GTTACTAGCTGTGTGACCTTGGGCATATTGTTCAACTTCTTT tsRNA ts-108 ts-108
18 1 2 6 [10/23]tRNA23-PseudoTTG_chr5_77318726 [AmC6]GTTACTAGCTGTGTGACCTTGGGCATATTGTTCAACTTCTTT tsRNA ts-108 ts-108
19 1 2 7 [20/13]tRNA8-SeCTCA_chr19_45981810 [AmC6]GGTAGTAACTAAGCGCCTTAAATCTTACTTATCGAACCGGACTTCTTT tsRNA ts-103 ts-103
20 1 2 8 [20/13]tRNA8-SeCTCA_chr19_45981810 [AmC6]GGTAGTAACTAAGCGCCTTAAATCTTACTTATCGAACCGGACTTCTTT tsRNA ts-103 ts-103

Total number of rows: 2304

Table truncated, full table size 121 Kbytes.




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