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Platform GPL27970 Query DataSets for GPL27970
Status Public on Jan 07, 2020
Title [Axiom_W660K_v2] Wheat Axiom 660K Genotyping Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Triticum aestivum
Manufacturer Affymetrix
Manufacture protocol see manufacturer's website
 
 
Submission date Jan 06, 2020
Last update date Jan 07, 2020
Contact name bai sheng sheng
E-mail(s) baissheng@163.com
Phone 15091184077
Organization name 西北农林科技大学
Department College of Agronomy
Lab Shaanxi Key Laboratory of Plant Genetic Engineering Breeding
Street address Xi Nong Road
City YangLing
State/province ShaanXi
ZIP/Postal code 712100
Country China
 
Samples (1) GSM4251896
Series (1)
GSE143188 Characterization of the Wheat-Psathyrostachys huashania 2Ns/2D Substitution Line H139: A Novel Germplasm with Enhanced Resistance to Wheat Take-all

Data table header descriptions
ID
Affy SNP ID
Chromosome
Physical Position
Strand
Flank
Allele A
Allele B
Ordered Alleles
Allele Count
SPOT_ID

Data table
ID Affy SNP ID Chromosome Physical Position Strand Flank Allele A Allele B Ordered Alleles Allele Count SPOT_ID
AX-108924073 Affx-111564211 chr7A 663755319 + GAGGCGCTCGTACATGCCGATGTCC[G/T]CCGTCTGGAGTTGGACGTTTGTGGAAAATAGTTGG T G T // G 2 AX-108924073
AX-111193382 Affx-88500560 chr4D 190491788 + GCGGGCATCGGCCGACAAGCGAG[G/T]GAGCAGCCACCGAGCCACGATCAACCCATCCTCGA T G T // G 2 AX-111193382
AX-109498810 Affx-110771843 + GCCCACCGCCGCAGAGGTCTCATA[G/T]GGTTCCGGTGCTGATAGGCTACTCACTAGAGTACG T G T // G 2 AX-109498810
AX-110440418 Affx-112315744 chr6B 150773303 + AGCATGCCATCTTTCAAATATGCACT[C/T]AGTTACCTCTCTGGAATTCTGCAAGCCTCTCTATT T C T // C 2 AX-110440418
AX-94448033 Affx-92112180 chr4A 274750575 + CAAAACGTGACCAGGTCATTTCTGGCTTGGACTCT[A/C]TGATGGATACGTTGCTGGCGCCAAGT A C A // C 2 AX-94448033
AX-94482663 Affx-92431498 + TGCCCTGGACGGCTGTAGAGCCGAGGTGCGGCGAG[A/C]AGATGGGCAGTCGGCAAGGCACAC A C A // C 2 AX-94482663
AX-108799834 Affx-111562237 chr3B 124123932 + TAAATATTAAAGTAGGAACCAAGACTATTGCAAGG[A/C]AATCATGCAAGTGGTAGTTGTGGCTT A C A // C 2 AX-108799834
AX-108937768 Affx-109349851 chrUn 87851790 + CCAGCTGCCGTGGCCATGCCTTGCC[A/G]TCACAGTCACGGGACTTGGTGGTTATCTACCACAT A G A // G 2 AX-108937768
AX-109046252 Affx-110538026 chr3A 519094720 + GTGTTGGGCTGTTTGGAGCAGCAATAACAAATTCA[C/T]GCATGGTGAGGACACGTACCAGC T C T // C 2 AX-109046252
AX-109461348 Affx-111391685 chr1B 7555932 + GGAAATGTGAACAACCGGTGTCTGCTTTATTATGG[A/C]TGAAACATAGTTATGACGTTCGT A C A // C 2 AX-109461348
AX-110175237 Affx-111027688 chr1A 572563387 + CCTGCGCCGTGACAACAACGCCC[A/G]CGCACGGACAATGATTTCTGCTGCGCGGCGATACC A G A // G 2 AX-110175237
AX-111152066 Affx-88414807 chr7B 132737123 + TTCATGTCTCGCGGCCTCCCTAGTTC[A/G]TCCCGGCACACAAGCGGGCTCAAACATCTTGATCG A G A // G 2 AX-111152066
AX-111806722 Affx-111663277 chr5A 131334141 + AGGGATGGGAGGAGATGCGCGGTC[A/G]TGGCCTAGTGACCATGGGATCGAGAAGTGGCTAGC A G A // G 2 AX-111806722
AX-112288949 Affx-88480783 chr4B 427505373 + AAAT[A/G]AGCAGCATATTTTTGTTCAGCAGCATCTCGCTCAG A G A // G 2 AX-112288949
AX-86172970 Affx-112315604 chr3D 507490942 + GACGAAGAACACGAGGAAGAACGA[A/G]GGAGGATGGACGAGCTTGTGAGGACCATGAATGAC A G A // G 2 AX-86172970
AX-89372711 Affx-92253682 chr5B 706155291 + TGATAATAATGGTGGTGGGTGTCTTATGAAGCAAG[C/T]GTCAACAAGTGCTGGTGTCTTACGCA T C T // C 2 AX-89372711
AX-94519728 Affx-92639508 chr7A 172980080 + ATATTCATGGCACAATTTATACGCTTCTGTGTTTG[A/C]ATCCCCAAGTCGTACAGCTTCAAG A C A // C 2 AX-94519728
AX-111673844 Affx-88340500 chr3B 146886345 + CTCCTGGAAACAGAGGCTGACAAATACACAACACA[C/T]AGGATGATCAGAATCACCTCATGGACAATATAGTC T C T // C 2 AX-111673844
AX-95684451 Affx-88401014 chr1B 456977180 + GCTGAATGCAATAAAACGAGAGGACCTGTGAGCAG[C/T]CAGCGATTTATCCGCTAACATGGAAA T C T // C 2 AX-95684451
AX-112289392 Affx-88364349 chr2D 264804445 + GCA[A/C]GTGTTTGCTAGCCCTGAACTGAAAATAACACTGCC A C A // C 2 AX-112289392

Total number of rows: 660009

Table truncated, full table size 95184 Kbytes.




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