miRNA microarray probe design, v3.2 (9/18 2008) miRNAs (2191 targets) were taken from the Sanger miRNA database, version 12. Total targets (excluding mismatches): 2191(miR)+14(siRNA)+24(snRNA)+30(spike-in)+30(mRNA) = 2289 hsa,mmu,dre,gga,rno,dme,cel Arrays of this design have barcodes that begin with 16021542 or 2521542. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jan 29, 2020
Last update date
Jan 30, 2020
Contact name
Andrea J Barczak
Organization name
UCSF Sandler Center Functional Genomics Core Facility
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