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Status
Public on Apr 06, 2020
Title
Agendia human array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
Performed by Agendia Inc.
Submission date
Mar 20, 2020
Last update date
Mar 20, 2020
Contact name
Wilbert Zwart
E-mail(s)
w.zwart@nki.nl Organization name
Netherlands Cancer Institute
Department
Oncogenomics
Lab
Zwart lab
Street address
Plesmanlaan 121
City
Amsterdam
State/province
Noord-Holland
ZIP/Postal code
1066CX
Country
Netherlands
Samples (102)
GSM4423119 , GSM4423120 , GSM4423121 , GSM4423122 , GSM4423123 , GSM4423124
GSM4423125 ,
GSM4423126 ,
GSM4423127 ,
GSM4423128 ,
GSM4423129 ,
GSM4423130 ,
GSM4423131 ,
GSM4423132 ,
GSM4423133 ,
GSM4423134 ,
GSM4423135 ,
GSM4423136 ,
GSM4423137 ,
GSM4423138 ,
GSM4423139 ,
GSM4423140 ,
GSM4423141 ,
GSM4423142 ,
GSM4423143 ,
GSM4423144 ,
GSM4423145 ,
GSM4423146 ,
GSM4423147 ,
GSM4423148 ,
GSM4423149 ,
GSM4423150 ,
GSM4423151 ,
GSM4423152 ,
GSM4423153 ,
GSM4423154 ,
GSM4423155 ,
GSM4423156 ,
GSM4423157 ,
GSM4423158 ,
GSM4423159 ,
GSM4423160 ,
GSM4423161 ,
GSM4423162 ,
GSM4423163 ,
GSM4423164 ,
GSM4423165 ,
GSM4423166 ,
GSM4423167 ,
GSM4423168 ,
GSM4423169 ,
GSM4423170 ,
GSM4423171 ,
GSM4423172 ,
GSM4423173 ,
GSM4423174 ,
GSM4423175 ,
GSM4423176 ,
GSM4423177 ,
GSM4423178 ,
GSM4423179 ,
GSM4423180 ,
GSM4423181 ,
GSM4423182 ,
GSM4423183 ,
GSM4423184 ,
GSM4423185 ,
GSM4423186 ,
GSM4423187 ,
GSM4423188 ,
GSM4423189 ,
GSM4423190 ,
GSM4423191 ,
GSM4423192 ,
GSM4423193 ,
GSM4423194 ,
GSM4423195 ,
GSM4423196 ,
GSM4423197 ,
GSM4423198 ,
GSM4423199 ,
GSM4423200 ,
GSM4423201 ,
GSM4423202 ,
GSM4423203 ,
GSM4423204 ,
GSM4423205 ,
GSM4423206 ,
GSM4423207 ,
GSM4423208 ,
GSM4423209 ,
GSM4423210 ,
GSM4423211 ,
GSM4423212 ,
GSM4423213 ,
GSM4423214 ,
GSM4423215 ,
GSM4423216 ,
GSM4423217 ,
GSM4423218 ,
GSM4423219 ,
GSM4423220 Series (1)
GSE147271 Gene expression of primary breast cancers from patients before and after neo-adjuvant Tamoxifen treatment
Data table header descriptions ID Agilent probe name
Annotation_combined A combination of GeneName and SystematicName, to be able to annotate as many probes as possible. When both names were supplied by Agendia, GeneName was preferred for downstream analysis.
ORF ORF Name
SystematicName Systematic name corresponding to particular probe, as supplied by Agendia, Inc.
Sequence Probe sequence, as supplied by Agendia, Inc.
SPOT_ID
Data table ID Annotation_combined ORF SystematicName Sequence SPOT_ID A_24_P685442
ENST00000590968
ENST00000590968
TGACAAGGAAAACGAGAATGCTGAGTGTAACAATGACCCCAGGAATTCAAGCCAAGGAGC
ENST00000590968
A_32_P95894
THC2770741
THC2770741
GGGCATGTCCATAGATTGACAAAGAAAGTTTACACTTTTGAATAAAGATGCAAAGTATGC
THC2770741
A_32_P76025
THC2765833
THC2765833
TCGTGTTGATTCTCCTGGTAGGCTCCTGGGCTATTCTCTAGTCAGCTCTCTGGCAGCAAA
THC2765833
A_23_P139725
ENST00000589924
ENST00000589924
GGGCTGATGTTCCTTTTGAAGAAGAGTTCAGAAAAAGGATGGTATCCTGTGAAGGAAAGC
ENST00000589924
A_24_P316532
BC040881
BC040881
ATTCTCCTTTAGCTGGCTGGCCACCTTTTAGTTTTTGGCACATGTCAAGCCCTTTCTTGC
BC040881
A_24_P195134
ENST00000372379
ENST00000372379
TAGATGAATGGATTATCTGCACTGATTGGGATGTCGGTTTTAGAGAGGGTCAACAGTATG
ENST00000372379
A_33_P3221613
ENST00000444919
ENST00000444919
ACACAGCAAGAAAGCCCTTATGAGACACTGAGTTCCGGCATCTTGATCTTGAACTTCACA
ENST00000444919
A_24_P724989
AK021983
AK021983
CAAGGAATCGGTTACCTTACTTTTGAGAGGATGTTCCACTCAAATCAACATTAAACAATC
AK021983
A_32_P135906
THC2644861
THC2644861
TTCTTTTACCCCCTTGTAACAATGCTCTACAAACACTTCCAATACACCTTGTCTGTTTTG
THC2644861
A_33_P3333683
THC2493232
THC2493232
GATTTCAGAGCTCAACCCCTAATTCAGACCCTTCTTTCCCGCGCCTTTATCTCATCTTTG
THC2493232
A_24_P913576
ENST00000556987
ENST00000556987
GAAGGACAATGTCTGAATTAAATGCCGTGCTTTAAACTGAAAGGGAAACTTAGCAAATAA
ENST00000556987
A_24_P877785
ENST00000432699
ENST00000432699
AATCTTAAGAAGATTAGAAGTTTACCAAATGCTCTGTAATGCATTTTGAAGGGCTATCCC
ENST00000432699
A_24_P938236
X03757
X03757
GTTCCCCGAAGGCTTCCAGTTTGACACCGACGATGTGAATTTCCCTCTCGATAATCTCTG
X03757
A_24_P705980
NP239955
NP239955
TCAAGGATCAGAAGGGCCAGTTTGTTTCTCCTGTGGCAAGACAGGACACATCAAAAAAGA
NP239955
A_24_P528846
NP110187
NP110187
AAGGCTCAAAAGCGTTTCCTTAAGATGTCTGGTAACTTCGACCTGTCTATCGAAGGTATG
NP110187
A_24_P937039
X15667
X15667
CTGTGAGCGCTAGTACGGATTCCACGTTTGAGTCCCAACATCTCCAGTATGTGTGCTGCT
X15667
A_24_P101642
ENST00000570121
ENST00000570121
CTGTGAAGGGCAGATTCACCATCTCCACAGACAACTCAAAGAACACGCTCTACCTGCAAA
ENST00000570121
A_33_P3378435
ENST00000543072
ENST00000543072
TGTGAACTCTTCCAGAGACAAAGTATTCGGGGAAAGAAAGGAAAAAGTAGGCACAGAAAG
ENST00000543072
A_24_P718223
AW105154
AW105154
ACCCACCGACACATGATGTCTACTGTGTTCTGAACATGCATAAGCATATAATTTGAACTG
AW105154
A_24_P367439
ENST00000354995
ENST00000354995
TTCAACATACTACCAAGTAGCACTGGCATAGAGAGATCCCTGGAATAAAATTTACCTACT
ENST00000354995
31300 3036 Kbytes .Supplementary data files not provided
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