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Platform GPL28373 Query DataSets for GPL28373
Status Public on Apr 10, 2020
Title GeoChip 5.0S
Technology type in situ oligonucleotide
Distribution commercial
Organisms Bacteria; Archaea; Eukaryota; Viruses
Manufacturer Agilent
Manufacture protocol Agilent 60-mer SurePrint technology
 
 
Submission date Apr 09, 2020
Last update date Apr 10, 2020
Contact name Claudia Gunsch
Organization name Duke University
Street address 100 Science Dr
City Durham
State/province NC
ZIP/Postal code 27705
Country USA
 
Samples (24) GSM4471240, GSM4471241, GSM4471242, GSM4471243, GSM4471244, GSM4471245 
Series (1)
GSE148431 Endophytic and rhizophytic prokaryotic communities in S. alterniflora and petroleum degradation

Data table header descriptions
ID
Protein GI GenBank accession number of gene
SPOT_ID NCBI Accession number
Gene Name of gene detected
Species The species gene is derived from
Lineage Phylogenetic information of organism
Annotation Additional information on the gene
Gene Category Category based on gene function
Subcategory 1 Coarse division of gene categories
Subcategory 2 Fine division of gene categories

Data table
ID Protein GI SPOT_ID Gene Species Lineage Annotation Gene Category Subcategory 1 Subcategory 2
296242846 296242846 YP_003650333.1 beta_agarase Thermosphaera aggregans DSM 11486 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermosphaera;species:Thermosphaera aggregans; agarase Carbon Cycling Carbon degradation Agar
37222162 37222162 AAP70366.1 beta_agarase uncultured bacterium superkingdom:Bacteria; AguL Carbon Cycling Carbon degradation Agar
37222160 37222160 AAP70364.1 beta_agarase uncultured bacterium superkingdom:Bacteria; AguJ Carbon Cycling Carbon degradation Agar
37222161 37222161 AAP70365.1 beta_agarase uncultured bacterium superkingdom:Bacteria; AguK Carbon Cycling Carbon degradation Agar
118472848 118472848 YP_890892.1 beta_agarase Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; unnamed protein product Carbon Cycling Carbon degradation Agar
21221895 21221895 NP_627674.1 beta_agarase Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; extracellular agarase Carbon Cycling Carbon degradation Agar
298513987 298513987 EFI37873.1 beta_agarase Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; putative agarase Carbon Cycling Carbon degradation Agar
298270237 298270237 EFI11823.1 beta_agarase Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; agarase Carbon Cycling Carbon degradation Agar
156109453 156109453 EDO11198.1 beta_agarase Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; hypothetical protein BACOVA_03101 Carbon Cycling Carbon degradation Agar
198271158 198271158 EDY95428.1 beta_agarase Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; hypothetical protein BACPLE_01694 Carbon Cycling Carbon degradation Agar
311905688 311905688 ADQ16129.1 beta_agarase Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; glycoside hydrolase family 16 Carbon Cycling Carbon degradation Agar
312130839 312130839 YP_003998179.1 beta_agarase Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; hypothetical protein Lbys_2130 Carbon Cycling Carbon degradation Agar
14484955 14484955 AAK62837.1 beta_agarase Microscilla sp. PRE1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla; "MS115, putative beta-agarase precursor" Carbon Cycling Carbon degradation Agar
261868870a 261868870 ACY02047.1 beta_agarase Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; agarase B8 Carbon Cycling Carbon degradation Agar
261868870b 261868870 ACY02047.1 beta_agarase Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; agarase B8 Carbon Cycling Carbon degradation Agar
341575491 341575491 AEK80424.1 beta_agarase Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; agarase Carbon Cycling Carbon degradation Agar
363581623 363581623 ZP_09314433.1 beta_agarase Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; beta-agarase Carbon Cycling Carbon degradation Agar
363581182 363581182 ZP_09313992.1 beta_agarase Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; glucose/sorbosone dehydrogenase Carbon Cycling Carbon degradation Agar
363582996 363582996 ZP_09315806.1 beta_agarase Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; beta-agarase Carbon Cycling Carbon degradation Agar
363581769 363581769 ZP_09314579.1 beta_agarase Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; agarase Carbon Cycling Carbon degradation Agar

Total number of rows: 49601

Table truncated, full table size 13038 Kbytes.




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