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Platform GPL28480 Query DataSets for GPL28480
Status Public on Jun 02, 2020
Title Agilent-086007 EfaecalisDD14_V2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Enterococcus faecalis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16086007 or 2586007.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date May 05, 2020
Last update date Jun 05, 2020
Contact name Anca Lucau-Danila
Organization name University of Lille
Department Biology
Lab Charles Viollette Institute
Street address Cité Scientifique SN2 303
City Villeneuve d'Ascq
ZIP/Postal code 59655
Country France
 
Samples (18) GSM4516245, GSM4516246, GSM4516247, GSM4516248, GSM4516249, GSM4516250 
Series (2)
GSE149873 Gene expression profiles of differentially expressed genes in Enterococcus faecalis 14 ΔBac mutant strain
GSE180397 Gene expression profiles of differentially expressed genes in Enterococcus faecalis 14 ΔpnpA mutant strain

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_788_PI442896112 CUST_788_PI442896112 FALSE 793 unmapped GCAAAGCATGCTTTTCTATCAAGAAAAGTTGCAGTGCCTAAAAAAAATGGCGGTAGCCTA
5 96 156 CUST_139_PI442896112 CUST_139_PI442896112 FALSE 139 unmapped TGGCTTGATTAATTTGATCACGCCAACATCTGGTGTCGTAATGGGTGGTTTGGAAATTTC
6 96 154 CUST_1950_PI442896112bis CUST_1950_PI442896112bis FALSE unmapped GTTCAGTTACTTATTTCAACAGGCAAAATTACCTGCCGAAGGGACCTTTCGTATGTTGCA
7 96 152 CUST_1920_PI442896112 CUST_1920_PI442896112 FALSE 1932 unmapped AATGGTAGCAGAACCTTATCATCTGGGACTGTTGTTCCAGTTAAGGGCATTGAGTATTCC
8 96 150 CUST_1280_PI442896112 CUST_1280_PI442896112 FALSE 1290 unmapped ACCTGAAACTGTCGCAAAGAATGTGTATCGTCATTTGCATCAAGAAACAACCTCTGAGAT
9 96 148 CUST_883_PI442896112 CUST_883_PI442896112 FALSE 888 unmapped GGCGGACAGCTTCTTTTTACAGGAACCCCAGCAAATATGCTAAATTCCACTCATTCTATT
10 96 146 CUST_555_PI442896112 CUST_555_PI442896112 FALSE 560 unmapped ATGAAGTGCGTTCACGGTTACCATTATCCATTCTGGCAAGAATTTTATTGGACGCCTATG
11 96 144 CUST_1045_PI442896112 CUST_1045_PI442896112 FALSE 1053 unmapped CTTTTGGACCAATTGGAACCATTGCGAAAGAACGTGCTTTTTTTGCGAAAGAGGTCTTAC
12 96 142 CUST_759_PI442896112 CUST_759_PI442896112 FALSE 764 unmapped CCGCAATGGGAACAAGCAACAATTTTCCTTTACATAAGATTCCCATCATGGCCAGTTTTG
13 96 140 CUST_2654_PI442896112 CUST_2654_PI442896112 FALSE 2668 unmapped AACCGAAAATATCGAAACCGTTAATCTAAATAGTGGAGACGATGTCCAAGCACTAGGCGG
14 96 138 CUST_1555_PI442896112 CUST_1555_PI442896112 FALSE 1566 unmapped GTTGCGCCAAATGTAGGACCATTTTTTGAAGAACTTGTTCAAGAACTCGAAAAGCAAGCA
15 96 136 CUST_1417_PI442896112 CUST_1417_PI442896112 FALSE 1427 unmapped AGCCGCGGTCAAAGAAGAACAAACAGACGATCGTTTATTCCAGTTAGCTTTCACTTATTT
16 96 134 CUST_1321_PI442896112 CUST_1321_PI442896112 FALSE 1331 unmapped GCCGAATCAAGAAAATACTTATATTTTATCTATTAACCCTAAAGCATATACGGAGTTGGC
17 96 132 CUST_1369_PI442896112 CUST_1369_PI442896112 FALSE 1379 unmapped GCCACGAGAGGTCATAAGTTGCTGAAAGACAAACAAGATGAATTGATGCGACGGTTTATT
18 96 130 CUST_1933_PI442896112 CUST_1933_PI442896112 FALSE 1945 unmapped CGAAAATGCGCCGTTTTGGTATTCGTTTGTTATCTTTTTGCATTCGAATGGCTTCTGGTA
19 96 128 CUST_328_PI442896112 CUST_328_PI442896112 FALSE 328 unmapped GGTGGAGCAGTCAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAATCCTG
20 96 126 CUST_46_PI442896112 CUST_46_PI442896112 FALSE 46 unmapped TTAAAGAAATCAACGTCATTGGTAGTGGCGGCCAAGCCAAATGGTATTTGGCAGATAATA

Total number of rows: 15744

Table truncated, full table size 1962 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL28480_086007_D_GEO_20190408.txt.gz 502.4 Kb (ftp)(http) TXT

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