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Status
Public on Jun 02, 2020
Title
Agilent-086007 EfaecalisDD14_V2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Enterococcus faecalis
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16086007 or 2586007. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
May 05, 2020
Last update date
Jun 05, 2020
Contact name
Anca Lucau-Danila
Organization name
University of Lille
Department
Biology
Lab
Charles Viollette Institute
Street address
Cité Scientifique SN2 303
City
Villeneuve d'Ascq
ZIP/Postal code
59655
Country
France
Samples (18)
GSM4516245 , GSM4516246 , GSM4516247 , GSM4516248 , GSM4516249 , GSM4516250
GSM5462297 ,
GSM5462298 ,
GSM5462299 ,
GSM5462300 ,
GSM5462301 ,
GSM5462302 ,
GSM5462303 ,
GSM5462304 ,
GSM5462305 ,
GSM5462306 ,
GSM5462307 ,
GSM5462308
Series (2)
GSE149873
Gene expression profiles of differentially expressed genes in Enterococcus faecalis 14 ΔBac mutant strain
GSE180397
Gene expression profiles of differentially expressed genes in Enterococcus faecalis 14 ΔpnpA mutant strain
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
CUST_788_PI442896112
CUST_788_PI442896112
FALSE
793
unmapped
GCAAAGCATGCTTTTCTATCAAGAAAAGTTGCAGTGCCTAAAAAAAATGGCGGTAGCCTA
5
96
156
CUST_139_PI442896112
CUST_139_PI442896112
FALSE
139
unmapped
TGGCTTGATTAATTTGATCACGCCAACATCTGGTGTCGTAATGGGTGGTTTGGAAATTTC
6
96
154
CUST_1950_PI442896112bis
CUST_1950_PI442896112bis
FALSE
unmapped
GTTCAGTTACTTATTTCAACAGGCAAAATTACCTGCCGAAGGGACCTTTCGTATGTTGCA
7
96
152
CUST_1920_PI442896112
CUST_1920_PI442896112
FALSE
1932
unmapped
AATGGTAGCAGAACCTTATCATCTGGGACTGTTGTTCCAGTTAAGGGCATTGAGTATTCC
8
96
150
CUST_1280_PI442896112
CUST_1280_PI442896112
FALSE
1290
unmapped
ACCTGAAACTGTCGCAAAGAATGTGTATCGTCATTTGCATCAAGAAACAACCTCTGAGAT
9
96
148
CUST_883_PI442896112
CUST_883_PI442896112
FALSE
888
unmapped
GGCGGACAGCTTCTTTTTACAGGAACCCCAGCAAATATGCTAAATTCCACTCATTCTATT
10
96
146
CUST_555_PI442896112
CUST_555_PI442896112
FALSE
560
unmapped
ATGAAGTGCGTTCACGGTTACCATTATCCATTCTGGCAAGAATTTTATTGGACGCCTATG
11
96
144
CUST_1045_PI442896112
CUST_1045_PI442896112
FALSE
1053
unmapped
CTTTTGGACCAATTGGAACCATTGCGAAAGAACGTGCTTTTTTTGCGAAAGAGGTCTTAC
12
96
142
CUST_759_PI442896112
CUST_759_PI442896112
FALSE
764
unmapped
CCGCAATGGGAACAAGCAACAATTTTCCTTTACATAAGATTCCCATCATGGCCAGTTTTG
13
96
140
CUST_2654_PI442896112
CUST_2654_PI442896112
FALSE
2668
unmapped
AACCGAAAATATCGAAACCGTTAATCTAAATAGTGGAGACGATGTCCAAGCACTAGGCGG
14
96
138
CUST_1555_PI442896112
CUST_1555_PI442896112
FALSE
1566
unmapped
GTTGCGCCAAATGTAGGACCATTTTTTGAAGAACTTGTTCAAGAACTCGAAAAGCAAGCA
15
96
136
CUST_1417_PI442896112
CUST_1417_PI442896112
FALSE
1427
unmapped
AGCCGCGGTCAAAGAAGAACAAACAGACGATCGTTTATTCCAGTTAGCTTTCACTTATTT
16
96
134
CUST_1321_PI442896112
CUST_1321_PI442896112
FALSE
1331
unmapped
GCCGAATCAAGAAAATACTTATATTTTATCTATTAACCCTAAAGCATATACGGAGTTGGC
17
96
132
CUST_1369_PI442896112
CUST_1369_PI442896112
FALSE
1379
unmapped
GCCACGAGAGGTCATAAGTTGCTGAAAGACAAACAAGATGAATTGATGCGACGGTTTATT
18
96
130
CUST_1933_PI442896112
CUST_1933_PI442896112
FALSE
1945
unmapped
CGAAAATGCGCCGTTTTGGTATTCGTTTGTTATCTTTTTGCATTCGAATGGCTTCTGGTA
19
96
128
CUST_328_PI442896112
CUST_328_PI442896112
FALSE
328
unmapped
GGTGGAGCAGTCAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAATCCTG
20
96
126
CUST_46_PI442896112
CUST_46_PI442896112
FALSE
46
unmapped
TTAAAGAAATCAACGTCATTGGTAGTGGCGGCCAAGCCAAATGGTATTTGGCAGATAATA
Total number of rows: 15744 Table truncated, full table size 1962 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL28480_086007_D_GEO_20190408.txt.gz
502.4 Kb
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