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Platform GPL28931 Query DataSets for GPL28931
Status Public on Dec 01, 2020
Title Agilent-065514 bHLH_promoters_complete
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Specific design for bHLHs. contains probes corresponding to 2 kb promoters and 1 kb downstream, as from TAIR10 usptream_ATG and downstream_STOP

Arrays of this design have barcodes that begin with 16065514 or 2565514.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jul 27, 2020
Last update date Dec 01, 2020
Contact name Jose M. Franco-Zorrilla
Organization name Centro Nacinal de Biotecnologia-CSIC
Department Plant Molecular Genetics
Street address Darwin, 3
City Madrid
State/province Madrid
ZIP/Postal code 28049
Country Spain
 
Samples (4) GSM4699087, GSM4699088, GSM4699089, GSM4699090
Series (2)
GSE155318 DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs [PromData]
GSE155321 DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 532 340 GE_BrightCorner GE_BrightCorner pos
2 532 338 DarkCorner DarkCorner pos
3 532 336 DarkCorner DarkCorner pos
4 532 334 DarkCorner DarkCorner pos
5 532 332 DarkCorner DarkCorner pos
6 532 330 DarkCorner DarkCorner pos
7 532 328 DarkCorner DarkCorner pos
8 532 326 DarkCorner DarkCorner pos
9 532 324 DarkCorner DarkCorner pos
10 532 322 DarkCorner DarkCorner pos
11 532 320 DarkCorner DarkCorner pos
12 532 318 DarkCorner DarkCorner pos
13 532 316 DarkCorner DarkCorner pos
14 532 314 DarkCorner DarkCorner pos
15 532 312 DarkCorner DarkCorner pos
16 532 310 DarkCorner DarkCorner pos
17 532 308 DarkCorner DarkCorner pos
18 532 306 DarkCorner DarkCorner pos
19 532 304 DarkCorner DarkCorner pos
20 532 302 DarkCorner DarkCorner pos

Total number of rows: 180880

Table truncated, full table size 32673 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided

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