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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 31, 2021 |
| Title |
nCounter Custom Melanoma Panel |
| Technology type |
other |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NanoString Technologies |
| Manufacture protocol |
Commercial process
|
| |
|
| |
|
| Submission date |
Aug 11, 2020 |
| Last update date |
Mar 31, 2021 |
| Contact name |
Dario Strbenac |
| E-mail(s) |
dario.strbenac@sydney.edu.au
|
| Organization name |
University of Sydney
|
| Department |
School of Mathematics and Statistics
|
| Street address |
City Road
|
| City |
Camperdown |
| State/province |
NSW |
| ZIP/Postal code |
2050 |
| Country |
Australia |
| |
|
| Samples (105)
|
GSM4720726, GSM4720727, GSM4720728, GSM4720729, GSM4720730, GSM4720731
GSM4720732, GSM4720733, GSM4720734, GSM4720735, GSM4720736, GSM4720737, GSM4720738, GSM4720739, GSM4720740, GSM4720741, GSM4720742, GSM4720743, GSM4720744, GSM4720745, GSM4720746, GSM4720747, GSM4720748, GSM4720749, GSM4720750, GSM4720751, GSM4720752, GSM4720753, GSM4720754, GSM4720755, GSM4720756, GSM4720757, GSM4720758, GSM4720759, GSM4720760, GSM4720761, GSM4720762, GSM4720763, GSM4720764, GSM4720765, GSM4720766, GSM4720767, GSM4720768, GSM4720769, GSM4720770, GSM4720771, GSM4720772, GSM4720773, GSM4720774, GSM4720775, GSM4720776, GSM4720777, GSM4720778, GSM4720779, GSM4720780, GSM4720781, GSM4720782, GSM4720783, GSM4720784, GSM4720785, GSM4720786, GSM4720787, GSM4720788, GSM4720789, GSM4720790, GSM4720791, GSM4720792, GSM4720793, GSM4720794, GSM4720795, GSM4720796, GSM4720797, GSM4720798, GSM4720799, GSM4720800, GSM4720801, GSM4720802, GSM4720803, GSM4720804, GSM4720805, GSM4720806, GSM4720807, GSM4720808, GSM4720809, GSM4720810, GSM4720811, GSM4720812, GSM4720813, GSM4720814, GSM4720815, GSM4720816, GSM4720817, GSM4720818, GSM4720819, GSM4720820, GSM4720821, GSM4720822, GSM4720823, GSM4720824, GSM4720825, GSM4720826, GSM4720827, GSM4720828, GSM4720829, GSM4720830
|
| Series (1) |
| GSE156030 |
Normalisation-free Gene Expression Survival Classification for Melanoma |
|
| Data table header descriptions |
| ID |
|
| Gene Symbol |
Gene symbol. |
| SPOT_ID |
|
| Category |
Type of molecule analysed. |
| SEQUENCE |
DNA sequence of probe, complementary to a section of the gene of interest. |
| Colours |
Six-letter combination of colours used for the Fluorescent barcode. R: red G: green B: blue Y: yellow |
| Data table |
| ID |
Gene Symbol |
SPOT_ID |
Category |
SEQUENCE |
Colours |
| POS_A(128) |
|
CONTROL |
RNA SPIKE |
ACGAAGCTGTTCGGCCGCACGCAAGTACCTCCCACTTAGAAAGCGAATAACCCAACGACCGTGTTCAACCCTGGCCGTCTCTCAACCAGGTATGCAATCA |
YRGRGR |
| POS_B(32) |
|
CONTROL |
RNA SPIKE |
ATGAAAGCGCTGCTACTATGATAAGAGTACACGTACAGGTCTCGCCCGATTGGATTATGGCGAGCTGCCGCATTGACGGACATACCTTTGAACGTAATCG |
BRYRBG |
| POS_C(8) |
|
CONTROL |
RNA SPIKE |
GCCGCTTTCGCTCGGGTCTGCGGGTTATAGCTTTTCAGTCTCGACGGGCTAGCACACATCTGGTTGACTAGGCGCATAGTCGCCATTCACAGATTTGCTC |
GRYBYB |
| POS_D(2) |
|
CONTROL |
RNA SPIKE |
TACCTGGCATTTGGGCACTTCTTGCGTTTAAGCGGGAAAGATCGCGAGGGCCCGCTATTTGCGATACTTCCCATGTCGGTGCCGTCGCCTCTATGTACTC |
YBYRGB |
| POS_E(0.5) |
|
CONTROL |
RNA SPIKE |
GGTTGAATTTGAGCGGATGGGCTCAACTGCGTCGTAACCGGTAGATACAGGGCATACGAGCCTCCCTATTTAACGGCATCATCCCGCGTAGTGCTGGTCA |
RYBRGB |
| POS_F(0.125) |
|
CONTROL |
RNA SPIKE |
TCAGGCCTTGCCCTTACTAATGGCGCGTTGTAACGGGCCTTGAGGGAATGTCACTATTGAGGCACCCGTTCGACCCTCAGAGATATACCATTCCGCCTAT |
YGBGBR |
| NEG_A(0) |
|
CONTROL |
RNA SPIKE |
AACCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCCTTGGATTCTGAGCCCG |
RGRBRY |
| NEG_B(0) |
|
CONTROL |
RNA SPIKE |
GCACTGGCATTGGTCGTTTCAGGAGGCCATACAGAACTGGTTTATATGAAGGAACATGGATCATTTGAAGTCATTGGGGAAACCCTTGATGATGCGGCAG |
BYGYGY |
| NEG_C(0) |
|
CONTROL |
RNA SPIKE |
GTACAGGCTGCTGGCTCATGTTTCCTTCTACGCTGCACTTGCGGGCATAGAGGTCGGTTGCGATCTATATTCGGAGATAACTATTCACCCAGCGCCACTC |
BGBRBG |
| NEG_D(0) |
|
CONTROL |
RNA SPIKE |
AGAGATCACGTGGACCAAAGCTGATTGATTACGGGACTGGCCGTAAGTGCTGCCCGCGAGTAGATCGTCTAGATCCGGCTAAAATTCCCTGCGGTGCCTT |
BGRYRY |
| NEG_E(0) |
|
CONTROL |
RNA SPIKE |
CCCAGATGACCTTCTCCCTCATAATCACTTAATCTGAGCGCAGGAGGCAGGCTGTATTAATTCCGGCCTCCAACCGGACCGTGGAACGACGCGACCAAGT |
RBRGBG |
| NEG_F(0) |
|
CONTROL |
RNA SPIKE |
GGGTCCTTACCGGCTGTAAGCTCACTACAATCCAGGTACAGAGTGCGTTAACCGGCCATTAGAGGGCCGCTACACCCGTCAGAATTTAAACGTATGGGCG |
GBYBRG |
| CENPB |
CENPB |
|
HOUSEKEEPING |
GGGCCCAGAGTCCAGCCGTCCAGCTGCTCCTTTCCCAGTTTGATTTCAATAAATCTGTCCACTCCCCTTTTGTGGGGGTGAACGTTTTAACAGCCAAAAA |
GRBRGB |
| CTBP1 |
CTBP1 |
|
HOUSEKEEPING |
CCCCTTGTTCCAAATGAAGACGGCATCACGAAGCAGCTCCAAAAGGAAAAGCTTGGGCGGTGCCCAGCGTGCCCGCTGCCCATCGACGTCTGTCCTGGGG |
RYRBGR |
| GNB2L1 |
GNB2L1 |
|
HOUSEKEEPING |
TGGTCTGCTGATGGCCAGACTCTGTTTGCTGGCTACACGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGC |
GYGBYG |
| RERE |
RERE |
|
HOUSEKEEPING |
GCATTCTTGTTAGCTTTGCTTTTCTCCCCATATCCCAAGGCGAAGCGCTGAGATTCTTCCATCTAAAAAACCCTCGACCCGAAACCCTCACCAGATAAAC |
YRYGYR |
| SNRPD2 |
SNRPD2 |
|
HOUSEKEEPING |
TGTGGAGAACAGACTGTCAGGGAACGTGGGTGGAGGCAGAGAGACCAGAAAGATTCCAGGACAGAGATGACAGAGGCTTAGGCCATGGAGCCTCCTCAAC |
BRBYRY |
| UQCR |
UQCR |
|
HOUSEKEEPING |
CACGTTGCATTAAACCTCACTGAAACCTGCTCCGTGCCCGGATGTTGATCATGCTGGTGGCTTGGTTACTGTGACTGTAGCTGGAGTGGCACAGGTGACC |
GBGYRG |
| ABCA8 |
ABCA8 |
|
ENDOGENOUS |
TGTCAGTGTGGACAGAGGCATTTGACTAAGCCAACCTCCTCTCACAGCCTCTGTATCTCTGCAGGCCATACTGGTTCCATTGTTCTGTATAATACTGAAT |
BGYBRY |
| ADAMDEC1 |
ADAMDEC1 |
|
ENDOGENOUS |
TTGACAACTTCCTGAGATGGCACAGTTCTAACCTGGGGAAAAAGATCCACGACCATGCTCAGCTTCTCAGCGGGATTAGCTTCAACAATCGACGTGTGGG |
RBRGYG |
Total number of rows: 204
Table truncated, full table size 26 Kbytes.
| Supplementary data files not provided |
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