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Platform GPL2907 Query DataSets for GPL2907
Status Public on Sep 30, 2006
Title Qiagen-Operon Arabidopsis 28.8k Genome Array (AtOligo 1.16.2.Y)
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer University of Arizona (Galbraith Lab)
Manufacture protocol (1) Microarray production and probe immobilization:
http://ag.arizona.edu/microarray/protocol1A.doc

(2) Oligo/gene list:
http://omad.operon.com/download/storage/arabidopsis_V1.0.2_genelist_s+.xls.zip

(3) Oligo data sheet:
http://omad.operon.com/download/storage/arabidopsis_V1.0.1_datasheet.pdf
Support glass
Coating unknown
 
Description ArrayIt® brand SuperAmine 2 Microarray Substrates (25 x 76 mm).
48 pins=12 metarows and 4 metacolumns, and the subarrays comprise 24 columns and 25 rows (20 x 60 mm).
 
Web link http://www.ag.arizona.edu/microarray/
Contributor(s) Galbraith DW, Elumalai R, Gong F, Formosa R, Gchachu M, Ozkan H, Watson T, Cheam L
Submission date Sep 30, 2005
Last update date Sep 30, 2006
Contact name Paul Passarinho
Organization name Plant Research International BV
Department Business Unit Bioscience
Lab Plant developmental systems
Street address Bornsesteeg 65
City Wageningen
ZIP/Postal code 6708 PD
Country Netherlands
 
Samples (10) GSM76477, GSM76479, GSM76480, GSM76481, GSM76482, GSM76483 
Series (1)
GSE3399 Identification of BABY BOOM downstream targets

Data table header descriptions
ID
SubarrRow MetaRow
SubarrCol MetaColumn
Row Row
Column Column
GB_ACC GenBank accession number
SPOT_ID
AGI_ACC AGI code
GENE_NAME Gene annotation
OLIGO_ID Oligonucleotide ID
SEQUENCE Oligonucleotide sequence

Data table
ID SubarrRow SubarrCol Row Column GB_ACC SPOT_ID AGI_ACC GENE_NAME OLIGO_ID SEQUENCE
1-1-1-1 1 1 1 1 AY042872 At5g46430 ribosomal protein L32; protein id: At5g46430.1 A020440_01 CGTAGCCAGGAAGACGAGTGAAAGCCCTAAAAGATATCATCTAGGGTTTTTCTTTTATCTGTCGTTAACT
1-1-1-2 1 1 1 2 M21414 At1g64740 alpha-tubulin, putative; protein id: At1g64740.1 A001043_01 TGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAA
1-1-1-3 1 1 1 3 AY042872 At5g46430 ribosomal protein L32; protein id: At5g46430.1 A020440_01 CGTAGCCAGGAAGACGAGTGAAAGCCCTAAAAGATATCATCTAGGGTTTTTCTTTTATCTGTCGTTAACT
1-1-1-4 1 1 1 4 M21414 At1g64740 alpha-tubulin, putative; protein id: At1g64740.1 A001043_01 TGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAA
1-1-1-5 1 1 1 5 AY042872 At5g46430 ribosomal protein L32; protein id: At5g46430.1 A020440_01 CGTAGCCAGGAAGACGAGTGAAAGCCCTAAAAGATATCATCTAGGGTTTTTCTTTTATCTGTCGTTAACT
1-1-1-6 1 1 1 6 M21414 At1g64740 alpha-tubulin, putative; protein id: At1g64740.1 A001043_01 TGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAA
1-1-1-7 1 1 1 7 AY042872 At5g46430 ribosomal protein L32; protein id: At5g46430.1 A020440_01 CGTAGCCAGGAAGACGAGTGAAAGCCCTAAAAGATATCATCTAGGGTTTTTCTTTTATCTGTCGTTAACT
1-1-1-8 1 1 1 8 M21414 At1g64740 alpha-tubulin, putative; protein id: At1g64740.1 A001043_01 TGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAA
1-1-1-9 1 1 1 9 AC025416 At1g12470 hypothetical protein; protein id: At1g12470.1 A000100_01 CCTTAATTGATGACTTCAAGGTTAGTCAACGTTTCCTCTTTTCCAGACACACACGCTCTGGCTTGGGCCA
1-1-1-10 1 1 1 10 AC000098 At1g05220 hypothetical protein; protein id: At1g05220.1 A000106_01 AACAAATTGCTATTGGCGTATTTGCCTTTCGTGGGTCTTGCAATTCTGGCAATGCTTCGTGGTCTGGTGA
1-1-1-11 1 1 1 11 AF000657 At1g23040 expressed protein; protein id: At1g23040.1 A000124_01 AAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGGAATTATGGCGTTCCTGATTCTTTGA
1-1-1-12 1 1 1 12 AC007654 At1g31390 hypothetical protein; protein id: At1g31390.1 A000130_01 AAGAGGTTGGATTATTTTCTGGACGTTTGGTTGTGACTTGTGAGGAGTCTTCATCAAGAACAATGGAAGA
1-1-1-13 1 1 1 13 AP000736 At3g29800 mitochondrial protein-like; contains similarity to AAA-type ATPase; protein id: At3g29800.1 A000148_01 AAAGTGGCATTATCGCAACTGTTAAGTTCCCTAACTTGGCCTTGGTCGAATGGCAAGGCACGCGTCGTGA
1-1-1-14 1 1 1 14 AC018849 At1g80470 F-box protein; protein id: At1g80470.1 A000154_01 TCGGAGATGTATCTGTGCGCTCTCCGTCACTAAGGCGCTTCAAACTTGAGTCTATGCGTGAGGATTATGA
1-1-1-15 1 1 1 15 AC002311 At1g23100 10kDa chaperonin (CPN10), putative; protein id: At1g23100.1 A000172_01 ACCGGAGAAATCATCTCAGTTGAATTCCGGGAGAGTTATAGCAGTTGGTCCTGGAGCTAGAGACAGAGCA
1-1-1-16 1 1 1 16 AF179371 At1g12520 copper/zinc superoxide dismutase copper chaperone, putative; protein id: At1g12520.1 A000178_01 AGCAGAATTCAAAGGCCCTGACATTTTCGGGGTAGTCCGATTTGCTCAGGTCAGTATGGAACTTGCAAGA
1-1-1-17 1 1 1 17 AC023064 At1g35400 hypothetical protein; protein id: At1g35400.1 A000480_01 ACTATTTGAGATGTTTATGCCTATCCAGGTCGAAGATCTCTGTCGTCATCTTGCTTCTTTACTCATATGA
1-1-1-18 1 1 1 18 AC012679 At1g73790 expressed protein; protein id: At1g73790.1 A000486_01 TGAGGCTCTCGCTACTCTCGTCAAGGAGCTTCGTAGGGATTCTGCTACAACAACAACTACGGTTGATTAA
1-1-1-19 1 1 1 19 AC022455 At1g30010 unknown protein; protein id: At1g30010.1 A000504_01 AGGCTGTGTGGGATTTCAAGACTCTTGGTGCTTGGAGATCAAAGTATGAAAATAAAAGAGAAGCAGATGA
1-1-1-20 1 1 1 20 AC022456 At1g41790 T4I21.8; pseudogene, Gypsy Ty-3 element (fragment) A000510_01 ACCCGCAGGTCCCGATTCCCCGAGCCGAATCTGACGAGGCTGACGAGATCAAAGTCTCTGACGACGAAGA

Total number of rows: 28800

Table truncated, full table size 4568 Kbytes.




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