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Platform GPL29075 Query DataSets for GPL29075
Status Public on Aug 29, 2020
Title Duke/RG_MM_v4
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol In situ oligosynthesized array with proprietary synthetic sequences that contain transcription factor binding sites and their 1-base variants.
 
 
Submission date Aug 28, 2020
Last update date Aug 29, 2020
Contact name Raluca Gordan
E-mail(s) raluca.gordan@duke.edu
Organization name Duke University
Department Center for Genomic and Computational Biology
Street address 101 Science Dr, CIEMAS 2179
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Samples (3) GSM4751888, GSM4751889, GSM4751890
Series (2)
GSE156375 DNA mismatches reveal conformational penalties in protein-DNA recognition
GSE157066 DNA mismatches reveal conformational penalties in protein-DNA recognition V

Data table header descriptions
ID
PROBE_ID Probe ID
NAME Probe name
SEQUENCE Probe sequence

Data table
ID PROBE_ID NAME SEQUENCE
1 Ctrl_MM4_000001 MM_v4_TBP_rev_STAT TGATACTATAAAAGTTCCTGGAATTTCCGGATACATCGCAAATGGGCGGTAGGCGAAAAA
2 Ctrl_MM4_000002 MM_v4_TBP_GCN3 TTCATTCTTTTATATGAGTCATTCATTCATTCATACCACAGTCCATGCCATCACGAAAAA
3 Ctrl_MM4_000003 MM_v4_TBP_palindrom_benny GATATATATAGAATGAATGAATTCCAGGAACGTGTTACCCGGAACAATGGCGCGGAAAAA
4 Ctrl_MM4_000004 for_myc_array_MM_stat CACCTGGGGAATTTCCGGGAAAGTCACCTTCTGTATAGTGGTGGAGTGACCGCGTAGTGC
5 Ctrl_MM4_000005 MM_v4_Myc_P53 CTTCGCGCGCGCGCATGTCCGCGGACATGCACACGCTGTGGCTAAGTTTCGGATAATCGG
6 Ctrl_MM4_000006 MM_v4_TBP_rev_STAT TGATACTATAAAAGTTCCTGGAATTTCCGGATACATCGCAAATGGGCGGTAGGCGAAAAA
7 Ctrl_MM4_000007 MM_v4_TBP_GCN3 TTCATTCTTTTATATGAGTCATTCATTCATTCATACCACAGTCCATGCCATCACGAAAAA
8 Ctrl_MM4_000008 MM_v4_TBP_palindrom_benny GATATATATAGAATGAATGAATTCCAGGAACGTGTTACCCGGAACAATGGCGCGGAAAAA
9 Ctrl_MM4_000009 for_myc_array_MM_stat CACCTGGGGAATTTCCGGGAAAGTCACCTTCTGTATAGTGGTGGAGTGACCGCGTAGTGC
10 Ctrl_MM4_000010 MM_v4_Myc_P53 CTTCGCGCGCGCGCATGTCCGCGGACATGCACACGCTGTGGCTAAGTTTCGGATAATCGG
11 Ctrl_MM4_000011 MM_v4_TBP_rev_STAT TGATACTATAAAAGTTCCTGGAATTTCCGGATACATCGCAAATGGGCGGTAGGCGAAAAA
12 Ctrl_MM4_000012 MM_v4_TBP_GCN3 TTCATTCTTTTATATGAGTCATTCATTCATTCATACCACAGTCCATGCCATCACGAAAAA
13 Ctrl_MM4_000013 MM_v4_TBP_palindrom_benny GATATATATAGAATGAATGAATTCCAGGAACGTGTTACCCGGAACAATGGCGCGGAAAAA
14 Ctrl_MM4_000014 for_myc_array_MM_stat CACCTGGGGAATTTCCGGGAAAGTCACCTTCTGTATAGTGGTGGAGTGACCGCGTAGTGC
15 Ctrl_MM4_000015 MM_v4_Myc_P53 CTTCGCGCGCGCGCATGTCCGCGGACATGCACACGCTGTGGCTAAGTTTCGGATAATCGG
16 Ctrl_MM4_000016 MM_v4_TBP_rev_STAT TGATACTATAAAAGTTCCTGGAATTTCCGGATACATCGCAAATGGGCGGTAGGCGAAAAA
17 Ctrl_MM4_000017 MM_v4_TBP_GCN3 TTCATTCTTTTATATGAGTCATTCATTCATTCATACCACAGTCCATGCCATCACGAAAAA
18 Ctrl_MM4_000018 MM_v4_TBP_palindrom_benny GATATATATAGAATGAATGAATTCCAGGAACGTGTTACCCGGAACAATGGCGCGGAAAAA
19 Ctrl_MM4_000019 for_myc_array_MM_stat CACCTGGGGAATTTCCGGGAAAGTCACCTTCTGTATAGTGGTGGAGTGACCGCGTAGTGC
20 Ctrl_MM4_000020 MM_v4_Myc_P53 CTTCGCGCGCGCGCATGTCCGCGGACATGCACACGCTGTGGCTAAGTTTCGGATAATCGG

Total number of rows: 15156

Table truncated, full table size 1562 Kbytes.




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Supplementary data files not provided
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