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Platform GPL29076 Query DataSets for GPL29076
Status Public on Aug 29, 2020
Title Duke/RG_MM_v5
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol In situ oligosynthesized array with proprietary synthetic sequences that contain transcription factor binding sites and their 1-base variants.
 
 
Submission date Aug 28, 2020
Last update date Aug 29, 2020
Contact name Raluca Gordan
E-mail(s) raluca.gordan@duke.edu
Organization name Duke University
Department Center for Genomic and Computational Biology
Street address 101 Science Dr, CIEMAS 2179
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Samples (1) GSM4751891
Series (2)
GSE156375 DNA mismatches reveal conformational penalties in protein-DNA recognition
GSE157067 DNA mismatches reveal conformational penalties in protein-DNA recognition VI

Data table header descriptions
ID
PROBE_ID Probe ID
NAME Probe name
SEQUENCE Probe sequence

Data table
ID PROBE_ID NAME SEQUENCE
1 MM_rv5_00001 Seq1_WT_fig1_r01 CGGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
2 MM_rv5_00002 Seq1_WT_fig1_r01 CGGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
3 MM_rv5_00003 Seq1_C->A_p1_r01 AGGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
4 MM_rv5_00004 Seq1_C->T_p1_r01 TGGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
5 MM_rv5_00005 Seq1_C->G_p1_r01 GGGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
6 MM_rv5_00006 Seq1_G->A_p2_r01 CAGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
7 MM_rv5_00007 Seq1_G->T_p2_r01 CTGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
8 MM_rv5_00008 Seq1_G->C_p2_r01 CCGAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
9 MM_rv5_00009 Seq1_G->A_p3_r01 CGAAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
10 MM_rv5_00010 Seq1_G->T_p3_r01 CGTAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
11 MM_rv5_00011 Seq1_G->C_p3_r01 CGCAAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
12 MM_rv5_00012 Seq1_A->T_p4_r01 CGGTAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
13 MM_rv5_00013 Seq1_A->C_p4_r01 CGGCAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
14 MM_rv5_00014 Seq1_A->G_p4_r01 CGGGAGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
15 MM_rv5_00015 Seq1_A->T_p5_r01 CGGATGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
16 MM_rv5_00016 Seq1_A->C_p5_r01 CGGACGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
17 MM_rv5_00017 Seq1_A->G_p5_r01 CGGAGGTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
18 MM_rv5_00018 Seq1_G->A_p6_r01 CGGAAATGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
19 MM_rv5_00019 Seq1_G->T_p6_r01 CGGAATTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA
20 MM_rv5_00020 Seq1_G->C_p6_r01 CGGAACTGTCGTAAACGTCGGATATCCGGTTCTTCTGGGCGCTAAGGGAGCTGACGGAGA

Total number of rows: 14944

Table truncated, full table size 1419 Kbytes.




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Supplementary data files not provided
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