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Platform GPL29661 Query DataSets for GPL29661
Status Public on Oct 09, 2024
Title Herbivorax saccincola A7 biomass degradation-related genes using Bio-Rad CFX96 Touch Real-Time PCR Detection System
Technology type RT-PCR
Distribution virtual
Organism Acetivibrio saccincola
Manufacturer Bio-rad laboratories, lnc.
Manufacture protocol see manufacturer's website
Catalog number 1855196
 
Description PCR assay
 
Submission date Jan 28, 2021
Last update date Oct 09, 2024
Contact name Sirilak Baramee
E-mail(s) sirilak.bct@gmail.com
Organization name Japan International Research Center for Agricultural Sciences
Street address 1-1 Ohwashi
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8686
Country Japan
 
Samples (5) GSM5048132, GSM5048133, GSM5048134, GSM5048135, GSM5048136
Series (1)
GSE165680 Transcriptional profiling of biomass degradation-related genes during Herbivorax saccincola A7 growth on different carbon sources

Data table header descriptions
ID
PT_ACC
GB_ACC
Gene name Gene name
Description Gene description
Note Gene identification

Data table
ID PT_ACC GB_ACC Gene name Description Note
A01 KX714804 16S rRNA 16S ribosomal RNA subunit Candidate of calibrator gene
A02 PQQ66017.1 Adk Adenylate kinase Candidate of calibrator gene
A03 PQQ67968.1 GluD glutamate dehydrogenase Candidate of calibrator gene
A04 PQQ66528.1 Gukl Guanylate kinase Candidate of calibrator gene
A05 PQQ65829.1 GyrA Gyrase subunit A Candidate of calibrator gene
A06 PQQ67368.1 RecA Recombinase A Candidate of calibrator gene
A07 PQQ65593.1 Rho Transcriptional termination factor Candidate of calibrator gene
A08 PQQ66025.1 RpoA DNA-directed RNA polymerase subunit A Candidate of calibrator gene
A09 PQQ65995.1 RpsJ 30S ribosomal protein S10 Candidate of calibrator gene
A10 PQQ68191.1 Tpi Triosephosphate isomerase Candidate of calibrator gene
B01 PQQ66558.1 Scaff Scaffoldin Interesting gene
B02 PQQ66559.1 Anchor_1 Anchoring protein Interesting gene
B03 PQQ67184.1 Anchor_2 Anchoring protein Interesting gene
B04 PQQ68014.1 Anchor_3 Anchoring protein Interesting gene
B05 WP_105367906.1 Anchor_4 Anchoring protein Interesting gene
B06 PQQ67419.1 Integrate_1 Integrated protein Interesting gene
B07 PQQ67420.1 Integrate_2 Integrated protein Interesting gene
B08 PQQ68369.1 GH5_1 Glycoside hydrolase family 5 Interesting gene
B09 PQQ67260.1 GH5_2 Glycoside hydrolase family 5 Interesting gene
B10 PQQ66425.1 GH5_3 Glycoside hydrolase family 5 Interesting gene

Total number of rows: 86

Table truncated, full table size 5 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided

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