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Platform GPL30988 Query DataSets for GPL30988
Status Public on Jan 12, 2024
Title Nanostring nCounter mRNA Custom CodeSet
Technology type other
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nanostring
Manufacture protocol See https://www.nanostring.com/products/ncounter-assays-panels/ncounter-custom-solutions/custom-codesets/
 
 
Submission date Nov 22, 2021
Last update date Jan 13, 2024
Contact name Leonore Wigger
E-mail(s) leonore.wigger@sib.swiss
Organization name Swiss Institute of Bioinformatics
Lab Vital-IT
Street address Amphipôle Building
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Samples (9) GSM5698745, GSM5698746, GSM5698747, GSM5698748, GSM5698749, GSM5698750 
Series (2)
GSE189313 Cortical miR-709 links glutamatergic signaling to NREM sleep EEG slow waves in an activity-dependent manner [NanoString]
GSE189353 Cortical miR-709 links glutamatergic signaling to NREM sleep EEG slow waves in an activity-dependent manner

Data table header descriptions
ID [Column in raw data: Name] Gene Symbol
GB_ACC [Column in raw data: Accession] GenBank Accession number "
CodeClass [Column in raw data: CodeClass] endogenous: endogeneous genes of interest; Housekeeping: Housekeeping genes hypthesized to be unchanging; Negative: Negative controls showing only background signal; Positive: positive controls spiked in at defined concentrations
ORF ORF Name

Data table
ID GB_ACC CodeClass ORF
Galntl6 NM_175032.3 Endogenous Galntl6
Prrg3 NM_001081135.2 Endogenous Prrg3
Smpd3 NM_021491.3 Endogenous Smpd3
Cdh13 NM_019707.4 Endogenous Cdh13
Wbscr17 NM_145218.3 Endogenous Wbscr17
Lingo2 NM_001166000.1 Endogenous Lingo2
Glipr2 NM_027450.3 Endogenous Glipr2
Opcml NM_177906.4 Endogenous Opcml
Ntm NM_172290.3 Endogenous Ntm
Rab3gap1 NM_178690.4 Endogenous Rab3gap1
Sdk1 NM_177879.5 Endogenous Sdk1
Bsn NM_007567.2 Endogenous Bsn
Dlgap1 NM_027712.3 Endogenous Dlgap1
Rnf157 NM_027258.1 Endogenous Rnf157
Ptprk NM_008983.2 Endogenous Ptprk
Dbpht2 NM_198866.2 Endogenous Dbpht2
Kcnip4 NM_001199242.1 Endogenous Kcnip4
Grik5 NM_008168.2 Endogenous Grik5
Cntnap2 NM_001004357.2 Endogenous Cntnap2
Acadm NM_007382.5 Endogenous Acadm

Total number of rows: 134

Table truncated, full table size 4 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL30988_platform_table_nanostring_custom_codeset.csv.gz 1.6 Kb (ftp)(http) CSV

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