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Platform GPL311 Query DataSets for GPL311
Status Public on May 27, 2003
Title CDMC_Drosophila_7k2
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Drosophila melanogaster
 
Description The CDMC_Drosophila_7K2 array is a primarily cDNA-based Drosophila melanogaster glass microarray. The array features 5,756 Berkeley Drosophila Genome Project cDNAs, 1,078 NIH Testis cDNAs (Andrews et al. 2000) and 546 gene fragments that were amplified from genomic DNA, together representing approximately 50% of the predicted genes in D. melanogaster. The array is produced by the Canadian Drosophila Microarray Centre at the University of Toronto and is available for distribution to academic labs.


Keywords = CDMC
Keywords = Drosophila
Keywords = microarray
Keywords = cDNA
 
Web link http://www.flyarrays.com
Contributor(s) Neal SJ, Gibson ML, So AK, Westwood JT
Citation(s) 14608405
Submission date Apr 28, 2003
Last update date Jan 18, 2013
Contact name Zak Razak
E-mail(s) z.razak@utoronto.ca
Phone 905-569-4664
URL http://www.flyarrays.com
Organization name University of Toronto
Department Zoology Department
Lab Canadian Drosophila Microarray Centre
Street address 3359 Mississauga Road
City Mississauga
State/province ON
ZIP/Postal code L5L 1C6
Country Canada
 
Samples (19) GSM6155, GSM6157, GSM6158, GSM6159, GSM6160, GSM6161 
Series (5)
GSE417 Kc167_RNA_Quant_Eval
GSE418 Kc167_Inter-slide_Variability_Test
GSE419 SL2_vs_Kc167_Dif_Expr

Data table header descriptions
ID
Old_ID ID prior to Sep. 30, 2004 update
CDMC_ID CDMC internal number to track individual amplifications.
GB_LIST GenBank Accession Number
SPOT_ID spot identifier
Duplicate Spots are printed in duplicate (a,b).
Block Block, or sub-array, on the printed surface in which the feature appears.
Spot_Column The column within the given block where the feature appears.
Spot_Row The row within the given block where the feature appears.
Plate_Coordinate Plate number (P) and alpha-numeric coordinate of the DNA in the printing source plate.
Clone Clone identifier from the Berkeley Drosophila Genome Project, NIH Testis Library (bs), Incyte primer set, or gene-specific PCR amplicon (GS, KP).
ORF The computed gene number (CG number) curated by FlyBase.
Flag Flags are used to mark control sequences (W,X,Y,Z) and to designate problem clones (V).
FBan_Number FlyBase annotation number.
CLONE_ID FBgn_Number: FlyBase gene identifier.
Gene_Symbol FlyBase gene symbol.
GENE Entrez GENE ID
UNIGENE UniGene cluster identifier.
Chromosome Chromosome.
Chromosome_Arm Chromosome arm.
CytoBand Polytene chromosome division.
Sequences_in_UniGene Number of sequences found in the UniGene cluster.
GB_ACC_5Prime GenBank accession number for the 5-prime clone sequence.
GB_ACC_3Prime GenBank accession number for the 3-prime clone sequence.
7K3_Coordinates_|B_C_R| Spot coordinates on the CDMC 7K3 array (GPL1473).

Data table
ID Old_ID CDMC_ID GB_LIST SPOT_ID Duplicate Block Spot_Column Spot_Row Plate_Coordinate Clone ORF Flag FBan_Number CLONE_ID Gene_Symbol GENE UNIGENE Chromosome Chromosome_Arm CytoBand Sequences_in_UniGene GB_ACC_5Prime GB_ACC_3Prime 7K3_Coordinates_|B_C_R|
1 CDMC00008_1 CDMC00008 AA694670, AW941122 a 1 1 1 P01A08 GM01211 CG13431 FBan0013431 FBgn0034521 Mgat1 37323 23258 2 2R 57A5 20 AA694670 AW941122 |1_1_1|
2 CDMC00008_2 CDMC00008 AA694670, AW941122 b 1 2 1 P01A08 GM01211 CG13431 FBan0013431 FBgn0034521 Mgat1 37323 23258 2 2R 57A5 20 AA694670 AW941122 |1_2_1|
3 CDMC00104_1 CDMC00104 AA246582, AW941588 a 1 3 1 P01E08 LD05365 CG12314 FBan0012314 FBgn0032389 34609 11087 2 2L 33B5 7 AA246582 AW941588 |1_7_1|
4 CDMC00104_2 CDMC00104 AA246582, AW941588 b 1 4 1 P01E08 LD05365 CG12314 FBan0012314 FBgn0032389 34609 11087 2 2L 33B5 7 AA246582 AW941588 |1_8_1|
5 CDMC00200_1 CDMC00200 AA391123, AW942117 a 1 5 1 P01I08 LD10220 CG9205 FBan0009205 FBgn0035181 38113 20739 3 3L 6.10E+03 27 AA391123 AW942117 |1_13_1|
6 CDMC00200_2 CDMC00200 AA391123, AW942117 b 1 6 1 P01I08 LD10220 CG9205 FBan0009205 FBgn0035181 38113 20739 3 3L 6.10E+03 27 AA391123 AW942117 |1_14_1|
7 CDMC00296_1 CDMC00296 AA538786, AW942481 a 1 7 1 P01M08 LD18389 CG6171 FBan0006171 FBgn0026737 41872 25471 3 3R 88F1 5 AA538786 AW942481 |1_19_1|
8 CDMC00296_2 CDMC00296 AA538786, AW942481 b 1 8 1 P01M08 LD18389 CG6171 FBan0006171 FBgn0026737 41872 25471 3 3R 88F1 5 AA538786 AW942481 |1_20_1|
9 CDMC00016_1 CDMC00016 AA694813, AW941143 a 1 9 1 P01A16 GM01586 CG30153 FBan0030153 FBgn0050153 246486 20835 2 2R 57A7 AA694813 AW941143 |1_3_1|
10 CDMC00016_2 CDMC00016 AA694813, AW941143 b 1 10 1 P01A16 GM01586 CG30153 FBan0030153 FBgn0050153 246486 20835 2 2R 57A7 AA694813 AW941143 |1_4_1|
11 CDMC00112_1 CDMC00112 AA246833, AW941605 a 1 11 1 P01E16 LD05823 CG14647 FBan0014647 FBgn0037244 40558 1056 3 3R 82B1 10 AA246833 AW941605 |1_9_1|
12 CDMC00112_2 CDMC00112 AA246833, AW941605 b 1 12 1 P01E16 LD05823 CG14647 FBan0014647 FBgn0037244 40558 1056 3 3R 82B1 10 AA246833 AW941605 |1_10_1|
13 CDMC00208_1 CDMC00208 AA391822, AW942152 a 1 13 1 P01I16 LD10746 CG1397 FBan0001397 FBgn0030275 32056 19691 X X 10A8 7 AA391822 AW942152 |1_15_1|
14 CDMC00208_2 CDMC00208 AA391822, AW942152 b 1 14 1 P01I16 LD10746 CG1397 FBan0001397 FBgn0030275 32056 19691 X X 10A8 7 AA391822 AW942152 |1_16_1|
15 CDMC00304_1 CDMC00304 AA539060, AW942496 a 1 15 1 P01M16 LD18757 CG10214 FBan0010214 FBgn0039115 42811 20237 3 3R 95B1 AA539060 AW942496 |1_21_1|
16 CDMC00304_2 CDMC00304 AA539060, AW942496 b 1 16 1 P01M16 LD18757 CG10214 FBan0010214 FBgn0039115 42811 20237 3 3R 95B1 AA539060 AW942496 |1_22_1|
17 CDMC00024_1 CDMC00024 AA202064 a 1 17 1 P01A24 LD02334 CG8472 FBan0008472 FBgn0000253 Cam 36329 577 2 2R 48F1-48F6 90 AA202064 |1_5_1|
18 CDMC00024_2 CDMC00024 AA202064 b 1 18 1 P01A24 LD02334 CG8472 FBan0008472 FBgn0000253 Cam 36329 577 2 2R 48F1-48F6 90 AA202064 |1_6_1|
19 CDMC00120_1 CDMC00120 AA263299, AW941617 a 1 19 1 P01E24 LD06393 CG6084 FBan0006084 FBgn0036182 39304 6959 3 3L 68C15 73 AA263299 AW941617 |1_11_1|
20 CDMC00120_2 CDMC00120 AA263299, AW941617 b 1 20 1 P01E24 LD06393 CG6084 FBan0006084 FBgn0036182 39304 6959 3 3L 68C15 73 AA263299 AW941617 |1_12_1|

Total number of rows: 16896

Table truncated, full table size 2357 Kbytes.






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